PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29174_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 269aa    MW: 29941 Da    PI: 4.7414
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29174_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.92.9e-10116162450
                                 XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                                  k++r+  +NR AA rsR+RKk++++ Le k+  Le+e ++L   l+
  Cotton_A_29174_BGI-A2_v1.0 116 AKKQRKQLRNRDAAVRSRERKKMYVKDLEMKSRYLEGECRRLSRVLQ 162
                                 69************************************999987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.6E-6110177IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.9E-12111175No hitNo description
PROSITE profilePS502179.645115172IPR004827Basic-leucine zipper domain
PfamPF001704.4E-10116172IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.63E-10117175No hitNo description
CDDcd147047.52E-17118169No hitNo description
PROSITE patternPS000360120135IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
EINWDTLLLE VDLPDFGNIL DNEPVTEPPP QPCSTQNPDE EPAVSSWIGE IEKVLMEDDN  60
FDPRVETQPV SDDDFLADLL VDSPPSSGGD VAGVDGADLH KQSQTHTDVD KDDPIAKKQR  120
KQLRNRDAAV RSRERKKMYV KDLEMKSRYL EGECRRLSRV LQCFIAENQA LRLTLHKGCA  180
FDASSAKQES AVLLLESLLL GSLLWFLGIM CLFTLPILPK SVLEAVPMAN EETQGPERVA  240
PRGAGSNRVG PSFVKSRRCK ASRGKMKEI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606263.10.0PREDICTED: bZIP transcription factor 60-like
TrEMBLA0A1U8PBC60.0A0A1U8PBC6_GOSHI; bZIP transcription factor 60-like
STRINGGorai.009G309200.11e-166(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46342848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.12e-29basic region/leucine zipper motif 60