PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_29173_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 461aa MW: 51332.4 Da PI: 5.5073

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_29173_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.5	1.3e-53	33	160	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksg 81 l+pGfrFhPtdeelv++yLk+kv++k+ ++ ++i+evdiyk+ePw+L +k+k++++ewyfFs dkky +g r nrat +g Cotton_A_29173_BGI-A2_v1.0 33 LAPGFRFHPTDEELVSYYLKRKVTNKPARF-DAIAEVDIYKHEPWNLSdkSKLKTRDQEWYFFSLLDKKYGNGGRMNRATGQG 114 579**********************999.99**********85348889999********************* PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatgkd+ev + +++l+g+kktLvf++g+ap+g +t+Wvmheyrl Cotton_A_29173_BGI-A2_v1.0 115 YWKATGKDREVRH-NSQLIGMKKTLVFHSGKAPDGLRTNWVMHEYRL 160 *********.99***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-60	29	182	IPR003441	NAC domain
PROSITE profile	PS51005	56.992	33	182	IPR003441	NAC domain
Pfam	PF02365	1.0E-27	35	160	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MGRETSLVAD PGPTAVATAT ATAAKTGSSA TALAPGFRFH PTDEELVSYY LKRKVTNKPA 60 RFDAIAEVDI YKHEPWNLSD KSKLKTRDQE WYFFSLLDKK YGNGGRMNRA TGQGYWKATG 120 KDREVRHNSQ LIGMKKTLVF HSGKAPDGLR TNWVMHEYRL IEEELERIGA LQGYVLCRVI 180 HKNNIGPPNG NRYAPFIEAE WDDGSAALVP GLDTEDDVAA GNDSIATNDV AATENAATES 240 NGVLRISSEQ DIEHPDEDAP PSDDVPRESP NERTDDCTLL PPCKIERSDD CPPLCMPNRE 300 APLSLFGHKR RRHNDFGPNH ANVTENSTRN VTENSTRMTQ DRWSSTTTTT TTTPPPPSSA 360 TTMAVSALLE FSLMESMEPK ENLHVPPTPK YNATTNLNSM VPPSCMKLIN DLQKEIHNTS 420 IERETLKLEM MSAQTMIDIL QSKIDFLSKE NENLKKSNRD V

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MGRETSLVAD PGPTAVATAT ATAAKTGSSA TALAPGFRFH PTDEELVSYY LKRKVTNKPA  60
RFDAIAEVDI YKHEPWNLSD KSKLKTRDQE WYFFSLLDKK YGNGGRMNRA TGQGYWKATG  120
KDREVRHNSQ LIGMKKTLVF HSGKAPDGLR TNWVMHEYRL IEEELERIGA LQGYVLCRVI  180
HKNNIGPPNG NRYAPFIEAE WDDGSAALVP GLDTEDDVAA GNDSIATNDV AATENAATES  240
NGVLRISSEQ DIEHPDEDAP PSDDVPRESP NERTDDCTLL PPCKIERSDD CPPLCMPNRE  300
APLSLFGHKR RRHNDFGPNH ANVTENSTRN VTENSTRMTQ DRWSSTTTTT TTTPPPPSSA  360
TTMAVSALLE FSLMESMEPK ENLHVPPTPK YNATTNLNSM VPPSCMKLIN DLQKEIHNTS  420
IERETLKLEM MSAQTMIDIL QSKIDFLSKE NENLKKSNRD V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	8e-47	32	184	19	170	NAC domain-containing protein 19
3swm_B	8e-47	32	184	19	170	NAC domain-containing protein 19
3swm_C	8e-47	32	184	19	170	NAC domain-containing protein 19
3swm_D	8e-47	32	184	19	170	NAC domain-containing protein 19
3swp_A	8e-47	32	184	19	170	NAC domain-containing protein 19
3swp_B	8e-47	32	184	19	170	NAC domain-containing protein 19
3swp_C	8e-47	32	184	19	170	NAC domain-containing protein 19
3swp_D	8e-47	32	184	19	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269\|PubMed:24045019, ECO:0000269\|PubMed:25578968, ECO:0000269\|PubMed:26617990}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847246	1e-170	KC847246.1 Gossypium hirsutum NAC domain protein NAC69 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017606261.1	0.0	PREDICTED: NAC domain-containing protein 86-like
Swissprot	Q9SQX9	1e-147	NAC50_ARATH; NAC domain containing protein 50
TrEMBL	A0A1U8PDS5	0.0	A0A1U8PDS5_GOSHI; NAC domain-containing protein 86-like
STRING	Gorai.009G309300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1780	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.2	1e-135	NAC domain containing protein 50

Publications ? help Back to Top
Zhang S, et al. C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov, 2019. [PMID:26617990]