PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_29133_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YA | ||||||||
Protein Properties | Length: 285aa MW: 31005 Da PI: 10.4329 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 96.8 | 2.3e-30 | 131 | 186 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++I++RRq+Rak+ ++kl +k+rkpy+h SRh hA+rRpRg+gGrF Cotton_A_29133_BGI-A2_v1.0 131 GPIYVNAKQYKGIMRRRQSRAKAVLQNKL-TKARKPYMHYSRHLHAMRRPRGCGGRF 186 69***************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.2E-34 | 128 | 189 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.454 | 129 | 189 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 6.6E-26 | 132 | 186 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.6E-21 | 132 | 154 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.6E-21 | 163 | 186 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MQTLHLKEHG GIGNQPMGQL ASTPPSSLPT LPWCSVLGSH QSLHGGEAFG AQLKPFLMEH 60 PSNGDQVFSS KQLNKGNTAQ FTIFPGDEQN KPQAVTSLQS DPSENRARFE LGFGQHMGRV 120 MLPLNMASEE GPIYVNAKQY KGIMRRRQSR AKAVLQNKLT KARKPYMHYS RHLHAMRRPR 180 GCGGRFLNTR GSGSDKDVTA TRKATQGLIS NRSCSSDSGT LNSSKGPTHS GASEVTSIYS 240 RGDLDHHFLI DHLGLSVHSI SSMINNQRGG TVTVATADNC CNLKV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 1e-16 | 130 | 187 | 2 | 60 | HAPB protein |
4g92_A | 1e-16 | 130 | 187 | 2 | 60 | HAPB protein |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX583629 | 2e-34 | JX583629.1 Gossypium hirsutum clone NBRI_GE16721 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017629596.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-10-like | ||||
TrEMBL | A0A2P5XMG7 | 0.0 | A0A2P5XMG7_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G363800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3008 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05690.1 | 9e-36 | nuclear factor Y, subunit A2 |