PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29100_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 393aa    MW: 41791.5 Da    PI: 6.8757
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29100_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_176.24.3e-24294356163
                                 XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ kv++L +eN++L++el++l++e++kl+se+
  Cotton_A_29100_BGI-A2_v1.0 294 ERELKRQKRKQSNRESARRSRLRKQAECEELQAKVESLANENHTLRNELKKLSDECEKLTSEN 356
                                 89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077779.3E-3050142IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1702.5E-20289354No hitNo description
SMARTSM003388.5E-22294358IPR004827Basic-leucine zipper domain
PfamPF001701.5E-21294356IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.38296359IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-12297353No hitNo description
CDDcd147024.31E-23299349No hitNo description
PROSITE patternPS000360301316IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MEDRKNPCGF TLERLGLVLN HTLVLSKSGR GHTDLILDFL KLRRLHKCDM GTEEESTPAK  60
PSKPTASTQE MPTTVSYPDW STQMQAYYGA AATPPLFAST VASPTPHPYI WGGQHPLMPP  120
YGTPVPYPAV YPPRGVYAHP NMAPMPSSAR NNGADGKDRG ATKKPKGSSG SKVGESAKAT  180
SGSGNDGGSQ SGESGSEGTS DRSDESNQQE VNAGKKGSFE QMLADANAQG KAAGALVPAE  240
PIVSMPATTL NIGMDLWSAS PAATGAAKTR PNASGTVATV PAGAMMPDQW IQDERELKRQ  300
KRKQSNRESA RRSRLRKQAE CEELQAKVES LANENHTLRN ELKKLSDECE KLTSENSSIK  360
DELMRICGPE AISNLEQGNP SSVGEAGGDE GNG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310316RRSRLRK
2310317RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017634781.10.0PREDICTED: G-box-binding factor 1-like isoform X1
SwissprotP427741e-110GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A0B0MM500.0A0A0B0MM50_GOSAR; G-box-binding factor 1-like protein
STRINGGorai.008G068900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72742643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-92G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]