PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_29050_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 203aa MW: 23013.2 Da PI: 9.7754 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.7 | 2.5e-32 | 1 | 117 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 +p GfrFhPtdeelvv+yLk+k+ + +l++ +vi+e+d++ ++Pw+Lp +v +++ yfFs+r + + gyW Cotton_A_29050_BGI-A2_v1.0 1 MPIGFRFHPTDEELVVHYLKRKALSLPLPA-SVISEFDVLGTHPWSLPGEV---NEKRYFFSSRGRDGG--------GSGGYW 71 699***************************.99***************554...4578*****988654........368*** PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k g++k+++++ ++e+vg+++tL+f + ++ ++t+W++h+yrl Cotton_A_29050_BGI-A2_v1.0 72 KPIGREKPIIETgSNEVVGMRRTLIFCGRKPSNHTNTRWFLHQYRL 117 **********9967778**********77888899*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.09E-40 | 1 | 142 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.824 | 1 | 142 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-20 | 2 | 117 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MPIGFRFHPT DEELVVHYLK RKALSLPLPA SVISEFDVLG THPWSLPGEV NEKRYFFSSR 60 GRDGGGSGGY WKPIGREKPI IETGSNEVVG MRRTLIFCGR KPSNHTNTRW FLHQYRLLHS 120 NSTQMVKREM AGDWLVFRVF QRKRKARKHA AKMATCIDFT ADCPVFNPPP QSTSPSSSEI 180 TEVSPNGLDE EESSAFITSC IRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-24 | 1 | 148 | 15 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 147 | QRKRKARK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847237 | 0.0 | KC847237.1 Gossypium hirsutum NAC domain protein NAC60 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017614824.1 | 1e-152 | PREDICTED: NAC domain-containing protein 83-like | ||||
TrEMBL | A0A1U8NHH9 | 1e-128 | A0A1U8NHH9_GOSHI; NAC domain-containing protein 83-like | ||||
TrEMBL | A0A2P5YUL7 | 1e-128 | A0A2P5YUL7_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.012G083700.1 | 1e-122 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7874 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 3e-37 | NAC domain containing protein 83 |