PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29012_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 199aa    MW: 22580.3 Da    PI: 9.4798
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29012_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-1894146456
                                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 + +++ eq+++Le+ Fe+ +++  +++ +LAk lgL+ rqV +WFqNrRa++k
  Cotton_A_29012_BGI-A2_v1.0  94 KKRLKLEQVKALEKSFESGNKLEPQRKLQLAKALGLKPRQVAIWFQNRRARWK 146
                                 4557889*********************************************9 PP
2HD-ZIP_I/II1261.6e-4092184193
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                 ekk+rl+ eqvk+LE+sFe+ +kLep+rK +la++Lgl+prqva+WFqnrRAR+ktk lEkdy++Lk++++alk++ ++L+++
  Cotton_A_29012_BGI-A2_v1.0  92 EKKKRLKLEQVKALEKSFESGNKLEPQRKLQLAKALGLKPRQVAIWFQNRRARWKTKLLEKDYDVLKKQCEALKADADALQAQ 174
                                 69********************************************************************************* PP

                 HD-ZIP_I/II  84 veeLreelke 93 
                                 +++L +e+++
  Cotton_A_29012_BGI-A2_v1.0 175 NKKLSAEVTT 184
                                 *****99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-1981147IPR009057Homeodomain-like
SuperFamilySSF466891.03E-1882147IPR009057Homeodomain-like
PROSITE profilePS5007116.74688148IPR001356Homeobox domain
SMARTSM003891.2E-1691152IPR001356Homeobox domain
CDDcd000864.00E-1693148No hitNo description
PfamPF000467.2E-1694146IPR001356Homeobox domain
PRINTSPR000317.1E-6119128IPR000047Helix-turn-helix motif
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
PRINTSPR000317.1E-6128144IPR000047Helix-turn-helix motif
PfamPF021838.8E-12149183IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MILHNVARLS IVYTVDDDHI SILELKIAVF WLTLPWRFLI LSSSRPMKII VMIISFPFLP  60
SPTLPRSECF SGVEQVLVED ESSDDDGSHV GEKKKRLKLE QVKALEKSFE SGNKLEPQRK  120
LQLAKALGLK PRQVAIWFQN RRARWKTKLL EKDYDVLKKQ CEALKADADA LQAQNKKLSA  180
EVTTAFSSSS TLDLIIASD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016666438.12e-93PREDICTED: homeobox-leucine zipper protein HAT7-like
SwissprotQ004662e-47HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA0A1U8HR575e-92A0A1U8HR57_GOSHI; homeobox-leucine zipper protein HAT7-like
STRINGGorai.012G055400.14e-92(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2842233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.13e-42homeobox 3