PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28997_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 481aa    MW: 52121.8 Da    PI: 7.4127
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28997_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.4e-30164223159
                                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+Hnh+
  Cotton_A_28997_BGI-A2_v1.0 164 MNDGCQWRKYGQKISKGNPCPRAYYRCTVAsGCPVRKQVQRCAEDMSILITTYEGNHNHP 223
                                 58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-32149225IPR003657WRKY domain
SuperFamilySSF1182903.79E-27157225IPR003657WRKY domain
PROSITE profilePS5081129.367159225IPR003657WRKY domain
SMARTSM007743.0E-36164224IPR003657WRKY domain
PfamPF031061.5E-26165223IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MGEVMEENER LKKMLEKIQE NYKSLQLSFF EILQQGAVKK SKCSSISSDH NDEPVVVEPE  60
LVSLSLGRTT PMESVKDEKT TSSIKSKDDP EIKASLTLGL DSKFQLSSPQ KSSEDQVKED  120
DGAAETWPPN KIQKTTSRNG DEDQQNHVKR ARVSVRARCD APTMNDGCQW RKYGQKISKG  180
NPCPRAYYRC TVASGCPVRK QVQRCAEDMS ILITTYEGNH NHPLPVSATA MASTTSAAAS  240
MMLSGSSTSQ PGLNGLNFSH HDNSTTRQFY LPNSTSSSLS PTITLDLTSS PSSSSNYFNS  300
FPTSFPRFPP TSLNFSSSES NILPAVWGNG YPGYGAVPYY QTQPGNSILG NESQNQIYQS  360
LPGNNQQGGA SQQSLTETLT KVITSDPSFR SVIAAAISSM VCNGAKSGDQ TDQKAQHFGQ  420
KLMQAMVSQN EKGQSSCSSS YFNGLASSSS QTGGSLLQSS LPFSILNSAF KPASDDKELK  480
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20151225174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614660.10.0PREDICTED: probable WRKY transcription factor 72 isoform X1
SwissprotQ9LXG81e-114WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLA0A1U8PMK60.0A0A1U8PMK6_GOSHI; probable WRKY transcription factor 72 isoform X1
STRINGGorai.012G056800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-69WRKY DNA-binding protein 72