PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28778_BGI-A2_v1.0
Common NameF383_16938
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 285aa    MW: 31947.1 Da    PI: 7.7179
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28778_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.5e-181461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+eEd llv +v+++G+g+W++++   g+ R+ k+c++rw +yl
  Cotton_A_28778_BGI-A2_v1.0 14 KGPWTPEEDILLVSYVQEHGPGNWRLVPTNTGLQRCSKSCRLRWTNYL 61
                                79********************************************97 PP
2Myb_DNA-binding46.21e-1467112148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg++T+ E+  ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Cotton_A_28778_BGI-A2_v1.0  67 RGNFTPHEEGMIIHLQALLGNK-WAAIASYLP-QRTDNDVKNYWNTHL 112
                                 89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-24564IPR009057Homeodomain-like
PROSITE profilePS5129426.424965IPR017930Myb domain
SuperFamilySSF466891.84E-3111108IPR009057Homeodomain-like
SMARTSM007172.6E-141363IPR001005SANT/Myb domain
PfamPF002494.8E-171461IPR001005SANT/Myb domain
CDDcd001671.17E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2465117IPR009057Homeodomain-like
PROSITE profilePS5129418.65266116IPR017930Myb domain
SMARTSM007173.2E-1366114IPR001005SANT/Myb domain
PfamPF002494.6E-1367112IPR001005SANT/Myb domain
CDDcd001673.80E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGRSPCCDKV GIKKGPWTPE EDILLVSYVQ EHGPGNWRLV PTNTGLQRCS KSCRLRWTNY  60
LRPGIKRGNF TPHEEGMIIH LQALLGNKWA AIASYLPQRT DNDVKNYWNT HLKKKLKKFQ  120
PAMELPQMAQ ACLNKTLATG SSSTIATYAS STENISRLLQ GWMRASPNIC SNQSAIILQT  180
QSKDESGGGD LMSNEHFESI LWFENMNNVA WEKSACGSTT SKGGFQDSGN DDQFSVEITQ  240
EMKQKTGNNS KFYPSFSSLE KWLLDDSCAG QVEEMNQSME LSPIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-24141164105MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-241211625128MYB TRANSFORMING PROTEIN
1mse_C1e-24141164105C-Myb DNA-Binding Domain
1msf_C1e-24141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016675555.10.0PREDICTED: myb-related protein 306-like
RefseqXP_017618776.10.0PREDICTED: myb-related protein 306
SwissprotB3VTV71e-113MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A0B0NRD80.0A0A0B0NRD8_GOSAR; Myb-related protein
TrEMBLA0A1U8IBH70.0A0A1U8IBH7_GOSHI; myb-related protein 306-like
TrEMBLA0A2P5VYZ30.0A0A2P5VYZ3_GOSBA; Uncharacterized protein
STRINGGorai.013G113000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.12e-96myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]