PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28738_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 415aa    MW: 45429.1 Da    PI: 6.9485
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28738_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.6e-1763112255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                 +y+GVr+++ +gr++AeIrdp+    +  r +lg+f+taeeAa a++ a+++++g
  Cotton_A_28738_BGI-A2_v1.0  63 RYRGVRRRP-WGRYAAEIRDPR----SkERRWLGTFDTAEEAACAYDCAARAMRG 112
                                 59*******.**********84....25999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.9E-3263128IPR001471AP2/ERF domain
PROSITE profilePS5103222.11563120IPR001471AP2/ERF domain
CDDcd000189.58E-3063119No hitNo description
PfamPF008475.4E-1163112IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-2163120IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-2963119IPR001471AP2/ERF domain
PRINTSPR003672.5E-96475IPR001471AP2/ERF domain
PRINTSPR003672.5E-986102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MEEAFKTLSG ITFVPDPDPR DSISDHPNKC AASTTTAVTP TTSNTPSNKR SLKENGGSGG  60
TMRYRGVRRR PWGRYAAEIR DPRSKERRWL GTFDTAEEAA CAYDCAARAM RGIKARTNFV  120
YPATEPHSTN DHFFPPFSFS KQSQSSIRDL NCIRNQFGQS SNWPPFASPH AGDFSGGGSS  180
TQRNASLNMI LFRDLLNSSS NSSLHAPLHH SLPEHFSFTN GTCASSFPFT FSSNSSVLPG  240
GSLLNSSINN TSPRASDSIS DSFTGSTMTL PLKESNSSHA TVAPTTDYME FFPQEPSDSG  300
LLQEVIQGFL PKPSSKKQDD SATTTNCTYH SISSPVNEMT LGQSLSGLKK EPLGFYVDYN  360
NQAVSQQFES FNRTTAMHYA NEIPAKHLQV GQDMLDDIFQ YPELMSVLAA RVQNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-20631301476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609378.10.0PREDICTED: ethylene-responsive transcription factor ESR2-like
TrEMBLA0A1U8HMY70.0A0A1U8HMY7_GOSHI; ethylene-responsive transcription factor ESR2-like
STRINGGorai.005G177900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73552541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-13DORNROSCHEN-like