PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28688_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 235aa    MW: 26874.4 Da    PI: 10.2985
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28688_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.41.6e-15129208186
                                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                                 f+k +++s+v+   +l lp +f++++  +k ++  +tl de+g ++   +    k+ +  l++GWk+F+ a+gL +gD +vF+
  Cotton_A_28688_BGI-A2_v1.0 129 FIKSMLQSHVTGGFWLGLPVHFCKTNL-PK-RDEVMTLVDEEGHEYPTIY--LAKKTG--LSGGWKGFAVAHGLVDGDAIVFQ 205
                                 89*********************9884.33.5568***************..555444..9********************** PP

                                 E-S CS
                          B3  84 ldg 86 
                                 l +
  Cotton_A_28688_BGI-A2_v1.0 206 LLQ 208
                                 876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.33E-20122210IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.0E-17123209IPR015300DNA-binding pseudobarrel domain
CDDcd100173.17E-23127206No hitNo description
PfamPF023623.0E-14129208IPR003340B3 DNA binding domain
PROSITE profilePS5086310.574129220IPR003340B3 DNA binding domain
SMARTSM010198.6E-17129220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVVAKEKMMS YEEIRQKRVE ENKKRMEALN LPQLSTLLHT PSFKPSPRKQ MKPRTVEKQL  60
VVVRRSSRVA NKPPPVYQEV LVDKVMIPRR LSKHRDLSNR VYASDEARAE ALEKAEKLES  120
GLDPHFPVFI KSMLQSHVTG GFWLGLPVHF CKTNLPKRDE VMTLVDEEGH EYPTIYLAKK  180
TGLSGGWKGF AVAHGLVDGD AIVFQLLQRL HYKGEGFPTK LAAVMLEPCQ RSQFR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640670.11e-154PREDICTED: B3 domain-containing protein At5g42700-like
SwissprotQ9FMZ41e-72Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A2P5XXE31e-172A0A2P5XXE3_GOSBA; Uncharacterized protein
STRINGGorai.002G131600.11e-150(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-68B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]