PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_28653_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 605aa MW: 69440.4 Da PI: 10.1045

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_28653_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84	1.4e-26	252	301	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i ledl+kyF+lpi +A+++L+v+lTvLKr+CR++GI+RWPhRkiksl Cotton_A_28653_BGI-A2_v1.0 252 ARIALEDLAKYFDLPIVEASRNLNVGLTVLKRKCREFGIPRWPHRKIKSL 301 6899********************************************97 PP
2	RWP-RK	84	1.4e-26	487	536	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i ledl+kyF+lpi +A+++L+v+lTvLKr+CR++GI+RWPhRkiksl Cotton_A_28653_BGI-A2_v1.0 487 ARIALEDLAKYFDLPIVEASRNLNVGLTVLKRKCREFGIPRWPHRKIKSL 536 6899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.179	236	323	IPR003035	RWP-RK domain
Pfam	PF02042	7.3E-22	254	301	IPR003035	RWP-RK domain
PROSITE profile	PS51519	19.929	471	556	IPR003035	RWP-RK domain
Pfam	PF02042	7.3E-22	489	536	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence Send to blast
MSRSGRTQPR LEAVLYLYLK VLFILKVITN VVLIFWFWRS TVASISQKIV QPIGKPCLTT 60 LVVFENTINK ELIRSLHVYR LENGEENEVE REFVFRKDGP YVETAAAPLL LLQGVPAHEL 120 FEGRVIGLWL CSFAFHIHRL PRFFFIPSLL SISRNPKLKS IPTLANDLQL IFQRGCGTED 180 RGPSRELSKE TCTRDGDNHY HLKRSLLVLD QDLNCLPNSG ATSELLKSRQ TEQNATGVAV 240 KKKKRADSKD VARIALEDLA KYFDLPIVEA SRNLNVGLTV LKRKCREFGI PRWPHRKIKS 300 LDGLIQLIRS LHVYRLENGE ENEVEREFVF RKDGPYVETA AAPLLLLQGV PAHELFEGRV 360 IGLWLCSFAF HIHRLPRFFF IPSLLSISRN PKLKSIPTLA NDLQLIFQRG CGTEDRGPSR 420 ELSKETCTRD GDNHYHLKRS LLVLDQDLNC LPNSGATSEL LKSRQTEQNA TGVAVKKKKR 480 ADSKDVARIA LEDLAKYFDL PIVEASRNLN VGLTVLKRKC REFGIPRWPH RKIKSLDGLI 540 RDLQEEAEQR QQDEAAAYAV AKRRMMLETE KESIEKEPFI ELKSETKRFR QDIFKRRHKA 600 RALKN

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence Send to blast

MSRSGRTQPR LEAVLYLYLK VLFILKVITN VVLIFWFWRS TVASISQKIV QPIGKPCLTT  60
LVVFENTINK ELIRSLHVYR LENGEENEVE REFVFRKDGP YVETAAAPLL LLQGVPAHEL  120
FEGRVIGLWL CSFAFHIHRL PRFFFIPSLL SISRNPKLKS IPTLANDLQL IFQRGCGTED  180
RGPSRELSKE TCTRDGDNHY HLKRSLLVLD QDLNCLPNSG ATSELLKSRQ TEQNATGVAV  240
KKKKRADSKD VARIALEDLA KYFDLPIVEA SRNLNVGLTV LKRKCREFGI PRWPHRKIKS  300
LDGLIQLIRS LHVYRLENGE ENEVEREFVF RKDGPYVETA AAPLLLLQGV PAHELFEGRV  360
IGLWLCSFAF HIHRLPRFFF IPSLLSISRN PKLKSIPTLA NDLQLIFQRG CGTEDRGPSR  420
ELSKETCTRD GDNHYHLKRS LLVLDQDLNC LPNSGATSEL LKSRQTEQNA TGVAVKKKKR  480
ADSKDVARIA LEDLAKYFDL PIVEASRNLN VGLTVLKRKC REFGIPRWPH RKIKSLDGLI  540
RDLQEEAEQR QQDEAAAYAV AKRRMMLETE KESIEKEPFI ELKSETKRFR QDIFKRRHKA  600
RALKN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017626823.1	0.0	PREDICTED: protein RKD5
Swissprot	O81791	2e-88	RKD5_ARATH; Protein RKD5
TrEMBL	A0A0B0NF67	0.0	A0A0B0NF67_GOSAR; Protein RKD5-like protein
TrEMBL	A0A2P5WDN9	0.0	A0A2P5WDN9_GOSBA; Uncharacterized protein
STRING	Gorai.003G002500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12049	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	8e-76	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]