PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28653_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 605aa    MW: 69440.4 Da    PI: 10.1045
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28653_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK841.4e-26252301352
                      RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                 ++i ledl+kyF+lpi +A+++L+v+lTvLKr+CR++GI+RWPhRkiksl
  Cotton_A_28653_BGI-A2_v1.0 252 ARIALEDLAKYFDLPIVEASRNLNVGLTVLKRKCREFGIPRWPHRKIKSL 301
                                 6899********************************************97 PP

2RWP-RK841.4e-26487536352
                      RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                 ++i ledl+kyF+lpi +A+++L+v+lTvLKr+CR++GI+RWPhRkiksl
  Cotton_A_28653_BGI-A2_v1.0 487 ARIALEDLAKYFDLPIVEASRNLNVGLTVLKRKCREFGIPRWPHRKIKSL 536
                                 6899********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151919.179236323IPR003035RWP-RK domain
PfamPF020427.3E-22254301IPR003035RWP-RK domain
PROSITE profilePS5151919.929471556IPR003035RWP-RK domain
PfamPF020427.3E-22489536IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MSRSGRTQPR LEAVLYLYLK VLFILKVITN VVLIFWFWRS TVASISQKIV QPIGKPCLTT  60
LVVFENTINK ELIRSLHVYR LENGEENEVE REFVFRKDGP YVETAAAPLL LLQGVPAHEL  120
FEGRVIGLWL CSFAFHIHRL PRFFFIPSLL SISRNPKLKS IPTLANDLQL IFQRGCGTED  180
RGPSRELSKE TCTRDGDNHY HLKRSLLVLD QDLNCLPNSG ATSELLKSRQ TEQNATGVAV  240
KKKKRADSKD VARIALEDLA KYFDLPIVEA SRNLNVGLTV LKRKCREFGI PRWPHRKIKS  300
LDGLIQLIRS LHVYRLENGE ENEVEREFVF RKDGPYVETA AAPLLLLQGV PAHELFEGRV  360
IGLWLCSFAF HIHRLPRFFF IPSLLSISRN PKLKSIPTLA NDLQLIFQRG CGTEDRGPSR  420
ELSKETCTRD GDNHYHLKRS LLVLDQDLNC LPNSGATSEL LKSRQTEQNA TGVAVKKKKR  480
ADSKDVARIA LEDLAKYFDL PIVEASRNLN VGLTVLKRKC REFGIPRWPH RKIKSLDGLI  540
RDLQEEAEQR QQDEAAAYAV AKRRMMLETE KESIEKEPFI ELKSETKRFR QDIFKRRHKA  600
RALKN
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017626823.10.0PREDICTED: protein RKD5
SwissprotO817912e-88RKD5_ARATH; Protein RKD5
TrEMBLA0A0B0NF670.0A0A0B0NF67_GOSAR; Protein RKD5-like protein
TrEMBLA0A2P5WDN90.0A0A2P5WDN9_GOSBA; Uncharacterized protein
STRINGGorai.003G002500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120492429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.18e-76RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H
    RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1909-1924
    [PMID:27870062]