PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_28630_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 152aa MW: 17043.1 Da PI: 7.5161 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.8e-18 | 30 | 82 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrd + +g r +lg+f+tae+Aa+a+++a+ +++g+ Cotton_A_28630_BGI-A2_v1.0 30 RYRGVRRRP-WGKFAAEIRDSTRlGG--PRLWLGTFDTAEDAARAYDRAAFAMRGA 82 59*******.**********433354..*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.433 | 30 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.73E-18 | 30 | 90 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-22 | 30 | 91 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.9E-34 | 30 | 95 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-13 | 30 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-30 | 30 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-11 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-11 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MAKCKSRLLF KVAMEGDKRK KAGEGDSSIR YRGVRRRPWG KFAAEIRDST RLGGPRLWLG 60 TFDTAEDAAR AYDRAAFAMR GASAILNFPD EHMASPTTNP PPSSSMASSS SSAIENAERK 120 REHDTQVLEL EYLDDELLEQ LLDFDNKDTK KD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-31 | 23 | 137 | 7 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX615645 | 1e-137 | JX615645.1 Gossypium hirsutum clone NBRI_GE59730 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016732607.1 | 1e-104 | PREDICTED: ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 8e-37 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A1U8N0G8 | 1e-102 | A0A1U8N0G8_GOSHI; ethylene-responsive transcription factor ERF098-like | ||||
STRING | Gorai.001G252400.1 | 3e-64 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24897 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 1e-17 | ERF family protein |
Publications ? help Back to Top | |||
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