PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28628_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 222aa    MW: 25110.2 Da    PI: 4.8636
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28628_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.7e-1989139255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                  y+GVr ++ +g+++AeIrd +++g  +r++lg+f++ae Aa a+++a+ +++g
  Cotton_A_28628_BGI-A2_v1.0  89 SYRGVRKRP-WGKFAAEIRDSTKRG--TRVWLGTFDSAEAAALAYDQAAFSMRG 139
                                 69*******.**********66665..*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.12E-1988148No hitNo description
PROSITE profilePS5103222.93289147IPR001471AP2/ERF domain
PfamPF008475.3E-1489139IPR001471AP2/ERF domain
SMARTSM003801.0E-3689153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3089148IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-2289149IPR016177DNA-binding domain
PRINTSPR003671.8E-1090101IPR001471AP2/ERF domain
PRINTSPR003671.8E-10113129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEDSWLLQYS KNADSSWFGS EEAFSSTCEW DELLLNFNIS QETAWMDLLG DEEEEEGKKG  60
KVSSECSNNS INGVKEGEVC SEEPKEVKSY RGVRKRPWGK FAAEIRDSTK RGTRVWLGTF  120
DSAEAAALAY DQAAFSMRGP LATLNFPIEA VKASLKELKG RCDEDKGWSP VVELKNRYSL  180
RKRSKNKKIK PKDAALRQQQ NLLVFEDLGA DYLEQLLISS CQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-27861491174Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179187LRKRSKNKK
2181187KRSKNKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6157211e-155JX615721.1 Gossypium hirsutum clone NBRI_GE59864 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017634440.11e-162PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y92e-54ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A1U8P8K71e-158A0A1U8P8K7_GOSHI; ethylene-responsive transcription factor 15-like
STRINGGorai.001G252600.11e-136(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1898938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.15e-38ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]