PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_28628_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 25110.2 Da PI: 4.8636 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.5 | 7.7e-19 | 89 | 139 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd +++g +r++lg+f++ae Aa a+++a+ +++g Cotton_A_28628_BGI-A2_v1.0 89 SYRGVRKRP-WGKFAAEIRDSTKRG--TRVWLGTFDSAEAAALAYDQAAFSMRG 139 69*******.**********66665..*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.12E-19 | 88 | 148 | No hit | No description |
PROSITE profile | PS51032 | 22.932 | 89 | 147 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.3E-14 | 89 | 139 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-36 | 89 | 153 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-30 | 89 | 148 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-22 | 89 | 149 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.8E-10 | 90 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-10 | 113 | 129 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MEDSWLLQYS KNADSSWFGS EEAFSSTCEW DELLLNFNIS QETAWMDLLG DEEEEEGKKG 60 KVSSECSNNS INGVKEGEVC SEEPKEVKSY RGVRKRPWGK FAAEIRDSTK RGTRVWLGTF 120 DSAEAAALAY DQAAFSMRGP LATLNFPIEA VKASLKELKG RCDEDKGWSP VVELKNRYSL 180 RKRSKNKKIK PKDAALRQQQ NLLVFEDLGA DYLEQLLISS CQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-27 | 86 | 149 | 11 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 179 | 187 | LRKRSKNKK |
2 | 181 | 187 | KRSKNKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX615721 | 1e-155 | JX615721.1 Gossypium hirsutum clone NBRI_GE59864 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017634440.1 | 1e-162 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 2e-54 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A1U8P8K7 | 1e-158 | A0A1U8P8K7_GOSHI; ethylene-responsive transcription factor 15-like | ||||
STRING | Gorai.001G252600.1 | 1e-136 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18989 | 3 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31230.1 | 5e-38 | ethylene-responsive element binding factor 15 |
Publications ? help Back to Top | |||
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