PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_28627_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 135aa MW: 15354.2 Da PI: 9.6544 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58 | 2.4e-18 | 21 | 72 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+++AeIrdp+ +r +lg+f t eeAa+a+++a+ +++g+ Cotton_A_28627_BGI-A2_v1.0 21 RYRGIRRRP-WGKFAAEIRDPTRK--GARLWLGTFETVEEAARAYDRAAFAFRGH 72 69*******.**********8542..4*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-31 | 21 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-23 | 21 | 80 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.58E-30 | 21 | 80 | No hit | No description |
PROSITE profile | PS51032 | 25.067 | 21 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-36 | 21 | 85 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-13 | 21 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-11 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-11 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MEASQRGKRK MKNEMENGGV RYRGIRRRPW GKFAAEIRDP TRKGARLWLG TFETVEEAAR 60 AYDRAAFAFR GHSAILNFPN EFQCQNPSFP ASSSCNSVGR VNPQRGGGSE VIEFEYLDNK 120 LLEDLLETQQ NMHGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-30 | 21 | 121 | 14 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016747858.1 | 6e-94 | PREDICTED: ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 3e-41 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A2P5X7W5 | 3e-94 | A0A2P5X7W5_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G252700.1 | 6e-93 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 3e-34 | ERF family protein |
Publications ? help Back to Top | |||
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