PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_28547_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 352aa MW: 38253 Da PI: 8.5597 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.5 | 1.5e-10 | 52 | 75 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 C +++rtG+C yG++C+++H++ Cotton_A_28547_BGI-A2_v1.0 52 TDCVYYMRTGFCGYGNSCRYNHPR 75 68********************96 PP | |||||||
2 | zf-CCCH | 41.6 | 2e-13 | 94 | 120 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tGtCk+G++CkF+H++ Cotton_A_28547_BGI-A2_v1.0 94 PGEPVCQFYLKTGTCKFGASCKFHHPK 120 5789*********************96 PP | |||||||
3 | zf-CCCH | 37.1 | 5.1e-12 | 141 | 166 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ Cotton_A_28547_BGI-A2_v1.0 141 GEKECSYYLKTGQCKFGITCKFHHPQ 166 7899********************97 PP | |||||||
4 | zf-CCCH | 37 | 5.7e-12 | 289 | 315 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H++ Cotton_A_28547_BGI-A2_v1.0 289 PGEPECQYYLRTGDCKFGSSCRYHHPR 315 5799*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.8E-6 | 48 | 75 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.169 | 48 | 76 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.14E-6 | 50 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-7 | 52 | 75 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.9E-5 | 54 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.9E-8 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.615 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.0E-11 | 95 | 120 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 97 | 121 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.7E-6 | 98 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-5 | 139 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.821 | 139 | 167 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-6 | 141 | 167 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-9 | 141 | 166 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-4 | 145 | 165 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.0E-6 | 288 | 315 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.817 | 288 | 316 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-9 | 290 | 315 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-6 | 292 | 317 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.7E-5 | 294 | 315 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MELYGRNPTR NGSQSGYQPE WSPAGPETGL EESMWQLSVR GVESYPERLG VTDCVYYMRT 60 GFCGYGNSCR YNHPRNRAAV EAAVRATGEY PERPGEPVCQ FYLKTGTCKF GASCKFHHPK 120 DGGGSFSHVS LNMHGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQPSGT SMSASAPQFY 180 QPVQYGGAST NVRVARPPPL PGSYVQGGAY GPVLFSPGVV PIPGWSHYLA PVSPVLSPGA 240 QPAAGATSLY GLTHLSSSTP SLAGPYSSLP SSTGLSRSNQ KEHTFPERPG EPECQYYLRT 300 GDCKFGSSCR YHHPRDRVVP QTNCVLSPMG LPLRPLEVFV PWGGNKETAL QP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021280725.1 | 0.0 | zinc finger CCCH domain-containing protein 32 | ||||
Swissprot | Q84W91 | 1e-170 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A0B0N077 | 0.0 | A0A0B0N077_GOSAR; Uncharacterized protein | ||||
STRING | Gorai.004G053200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5912 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-159 | C3H family protein |