PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28528_BGI-A2_v1.0
Common NameF383_23688
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 296aa    MW: 33471.1 Da    PI: 5.6941
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28528_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-1976124355
                         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Cotton_A_28528_BGI-A2_v1.0  76 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 124
                                 9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-2275133IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-3275133IPR001471AP2/ERF domain
PROSITE profilePS5103223.77575132IPR001471AP2/ERF domain
SMARTSM003801.1E-3775138IPR001471AP2/ERF domain
PRINTSPR003677.5E-127687IPR001471AP2/ERF domain
PfamPF008475.9E-1276124IPR001471AP2/ERF domain
CDDcd000182.05E-3376133No hitNo description
PRINTSPR003677.5E-1298114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MCGGAIISEF ITRKGAHGVT ASDIWPNSPF VKNGFSSDST QSFHDDSLAL CKRHRPQSSD  60
GVQVEKKVKR QRKNLYRGIR QRPWGKWAAE IRDPRKGVRV WLGTFNTAEE AARAYDREAR  120
KIRGKKAKVN FPNEDDAFST QYNPQINNST TAWNFTHPSN PPIYQHPQIN NGFHYGWNDL  180
GGFATDPIVV SEEESSGSGD QNTNLFYLPV KPEEQQEGEA VNKSAIFEVQ EEENQAQKLS  240
EELIAYENYM KFFQIPYLDG QSPMTQNAVA QQESVFGELW NFLDDGVAVP PTSMPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2276132360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16671KVKRQR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625201.10.0PREDICTED: ethylene-responsive transcription factor ERF073-like
TrEMBLA0A0B0NV990.0A0A0B0NV99_GOSAR; Ethylene-responsive transcription factor RAP2-3-like protein
STRINGGorai.004G051600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-28ethylene-responsive element binding protein