PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28452_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 286aa    MW: 33069.3 Da    PI: 8.3708
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28452_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.71.4e-5491341128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                 lppGfrFhPtdeel+++yLk+++++k++++ ++i+evdiyk++Pw+Lp k++ +ekewyfFs+rd+ky++g r+nrat sgyW
  Cotton_A_28452_BGI-A2_v1.0   9 LPPGFRFHPTDEELITFYLKNQAKSKPCPV-SIIPEVDIYKFDPWQLPDKAEFGEKEWYFFSPRDRKYPNGVRPNRATVSGYW 90 
                                 79****************************.89***************99999****************************** PP

                         NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 katg+dk+++s +++ vg+kk Lvfykg+ pkg ktdW+mheyrl
  Cotton_A_28452_BGI-A2_v1.0  91 KATGTDKAIYS-GSKYVGVKKALVFYKGKPPKGLKTDWIMHEYRL 134
                                 ***********.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-665161IPR003441NAC domain
PROSITE profilePS5100561.2059161IPR003441NAC domain
PfamPF023654.3E-2710134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
METKTSSDLP PGFRFHPTDE ELITFYLKNQ AKSKPCPVSI IPEVDIYKFD PWQLPDKAEF  60
GEKEWYFFSP RDRKYPNGVR PNRATVSGYW KATGTDKAIY SGSKYVGVKK ALVFYKGKPP  120
KGLKTDWIMH EYRLNDSRKQ ITKQNGSMRL DDWVLCRIYK KKNPGGRGLD QQVEESNAPI  180
HMTQCSNDAS ETQQMLKFPR TNSSVPQLLE LDYMGPISQL LGENTYNSSF DYFPNTIDSN  240
TTGDHVEKLQ LQEIPYQYTD SGKLQVNESG FLNQQVYMNP MLYQFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-71516313167NO APICAL MERISTEM PROTEIN
1ut4_B3e-71516313167NO APICAL MERISTEM PROTEIN
1ut7_A3e-71516313167NO APICAL MERISTEM PROTEIN
1ut7_B3e-71516313167NO APICAL MERISTEM PROTEIN
3swm_A3e-71516316170NAC domain-containing protein 19
3swm_B3e-71516316170NAC domain-containing protein 19
3swm_C3e-71516316170NAC domain-containing protein 19
3swm_D3e-71516316170NAC domain-containing protein 19
3swp_A3e-71516316170NAC domain-containing protein 19
3swp_B3e-71516316170NAC domain-containing protein 19
3swp_C3e-71516316170NAC domain-containing protein 19
3swp_D3e-71516316170NAC domain-containing protein 19
4dul_A3e-71516313167NAC domain-containing protein 19
4dul_B3e-71516313167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2038950.0KP203895.1 Gossypium hirsutum putative NAC transcription factor (SNAC1) mRNA, complete cds.
GenBankKP3000080.0KP300008.1 Gossypium hirsutum cultivar CCRI10 NAP (NAP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640689.10.0PREDICTED: NAC transcription factor 29-like
SwissprotK4BNG71e-116NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLA0A0E3M0780.0A0A0E3M078_GOSHI; NAC transcription factor 29-like
STRINGGorai.005G142300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77072641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-113NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]