PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28415_BGI-A2_v1.0
Common NameF383_29821
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 299aa    MW: 33650.9 Da    PI: 6.2918
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28415_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.2e-082482812154
                                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                 k +yp+++++++L +++gL+ +q+ +WF N+R +
  Cotton_A_28415_BGI-A2_v1.0 248 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 281
                                 468*****************************87 PP
2ELK25.53.1e-09202223122
                         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                 ELK +L++++++++ ++++E++
  Cotton_A_28415_BGI-A2_v1.0 202 ELKIELKQGFKSRIEDVREEIL 223
                                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.2E-183579IPR005540KNOX1
PfamPF037901.3E-173778IPR005540KNOX1
SMARTSM012563.0E-2491146IPR005541KNOX2
PfamPF037911.6E-1794145IPR005541KNOX2
PROSITE profilePS512139.132202222IPR005539ELK domain
PROSITE profilePS5007111.661222285IPR001356Homeobox domain
SMARTSM003894.6E-11224289IPR001356Homeobox domain
SuperFamilySSF466893.08E-16224289IPR009057Homeodomain-like
CDDcd000861.27E-11225286No hitNo description
Gene3DG3DSA:1.10.10.605.5E-25229287IPR009057Homeodomain-like
PfamPF059201.0E-17242281IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MQEPGGLGMM SSGGGSETIG GLSSGEVSVT GDQNRHLKAE IATHPLYEQL LAAHVSCLRV  60
ATPIDQLSLI DAQLAESHNI LRSYASQQQG HSLSPHERQE LDNFLAQYLI VLCTFKEQLQ  120
QHVRVHAVEA VMACREIENN LQALTGVTLG EGTGATMSDD EDELQMDFSM DQSGPEGHDL  180
MGFGPLLPTE SERSLMERVR QELKIELKQG FKSRIEDVRE EILRKRRAGK LPGDTTAVLK  240
NWWQQHSKWP YPTEDDKAKL VEETGLQLKQ INNWFINQRK RNWHSNSQSV TSLKSKRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278298RKRNWHSNSQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017642580.10.0PREDICTED: homeobox protein HD1
SwissprotQ9FPQ81e-171KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A0B0MVI30.0A0A0B0MVI3_GOSAR; Homeobox protein knotted-1-like 7
STRINGGorai.003G163800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-170KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]