PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28388_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 165aa    MW: 18822.9 Da    PI: 7.2349
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28388_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.91.1e-133189563
                                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                                ++ +r+ +NRe+ArrsR RK++ ++eL   v +L++ N +    ++  +++++++++e+
  Cotton_A_28388_BGI-A2_v1.0 31 RKRKRMLSNRESARRSRMRKQKHLDELMAQVSNLTNHNNQIHTSINVTTQLYSNVEAEN 89
                                57899****************************************99999999988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.2E-112677No hitNo description
SMARTSM003388.6E-172791IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.3352992IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.81E-123182No hitNo description
PfamPF001701.7E-103187IPR004827Basic-leucine zipper domain
CDDcd147021.77E-173283No hitNo description
PROSITE patternPS0003603449IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MATSSSGASS GSSTLRSSSS SEDFQPILDE RKRKRMLSNR ESARRSRMRK QKHLDELMAQ  60
VSNLTNHNNQ IHTSINVTTQ LYSNVEAENL VLRAQMTELS NRLQSLNEII HFINSSNAVL  120
QNDTNFDQAA YCHPHHQLND DSLMNPWNFS TTNQPFMPSA DMMMY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13051RKRKRMLSNRESARRSRMRKQK
24350RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017637264.11e-119PREDICTED: bZIP transcription factor 11-like
SwissprotC0Z2L59e-44BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A1U8MD221e-117A0A1U8MD22_GOSHI; bZIP transcription factor 53-like
TrEMBLA0A2P5YKY31e-117A0A2P5YKY3_GOSBA; Uncharacterized protein
STRINGGorai.008G065300.11e-100(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.13e-43basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]