PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28384_BGI-A2_v1.0
Common NameF383_16162
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 224aa    MW: 26057.7 Da    PI: 10.1417
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28384_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.21.2e-29959151
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                krien +nrqvt+skRrngi+KKA+EL vLCda+v++i+fsstgk++e++s
  Cotton_A_28384_BGI-A2_v1.0  9 KRIENATNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSTGKFHEFIS 59
                                79***********************************************86 PP
2K-box95.49.2e-3271165195
                       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                                 yqk++g++l+ +++e++q+++++Lk+ +++L+re+R+++G d+++L++keLq Le ++++sl  iR++K++++++q+++ +kk
  Cotton_A_28384_BGI-A2_v1.0  71 YQKTTGTDLWISHYEKMQENYRRLKEINKKLRREIRQRMGGDVDDLNIKELQALEAKMDSSLVAIRDRKYHVIKTQTDTHKKK 153
                                 8999******************************************************************************* PP

                       K-box  84 ekelqeenkaLr 95 
                                  ++l+e++ +L 
  Cotton_A_28384_BGI-A2_v1.0 154 VRNLEERHANLV 165
                                 *********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.941161IPR002100Transcription factor, MADS-box
SMARTSM004326.0E-42160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-37295IPR002100Transcription factor, MADS-box
CDDcd002657.50E-40280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-28323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-283859IPR002100Transcription factor, MADS-box
PfamPF014868.2E-2282165IPR002487Transcription factor, K-box
PROSITE profilePS5129715.46184178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGRGKIEIKR IENATNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSS TGKFHEFISP  60
NISTKAFFDL YQKTTGTDLW ISHYEKMQEN YRRLKEINKK LRREIRQRMG GDVDDLNIKE  120
LQALEAKMDS SLVAIRDRKY HVIKTQTDTH KKKVRNLEER HANLVFDLET KLDQQDGIVE  180
SEGYYNEAAN GASNLHALRL YQIHHPNLVL HHGGRFGSND LRLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-15162162MEF2C
5f28_B1e-15162162MEF2C
5f28_C1e-15162162MEF2C
5f28_D1e-15162162MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0069110.0HM006911.1 Gossypium hirsutum transcription factor TM6 (TM6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636571.11e-167PREDICTED: floral homeotic protein PMADS 1-like
SwissprotQ003J21e-111TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A0B0N9Z31e-165A0A0B0N9Z3_GOSAR; Floral homeotic PMADS 1
STRINGGorai.008G064900.11e-158(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52612750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.15e-70MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]