PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_28371_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 25969 Da PI: 5.4205 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2e-19 | 95 | 144 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + ng r++lg+f+tae Aa a+++a+++++g Cotton_A_28371_BGI-A2_v1.0 95 YRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDTAESAALAYDQAALAMRG 144 9*******.**********44465..*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.9E-31 | 94 | 153 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-36 | 94 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.09 | 94 | 152 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.78E-29 | 95 | 152 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-22 | 95 | 153 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.4E-11 | 95 | 106 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.5E-14 | 95 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-11 | 118 | 134 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MGSSFFQYPN LHFSSESSSS HISQENFSPH SSFRYAQKQA LPFNENDSQE MLLFGVLNQA 60 TEAHSFDTTS VTSFRNDHED NSEPVEEETA KEISYRGVRK RPWGKYAAEI RDSTRNGVRV 120 WLGTFDTAES AALAYDQAAL AMRGPMAILN FPMDKVYESL QEMKYGFEEG CSPVLTMKKK 180 YSMKTRRSGK KKMIKKDEKE NRLVLEDLGS DYLEELLSLS ETATPYW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-27 | 90 | 152 | 10 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 191 | RRSGKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017628490.1 | 1e-171 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 5e-64 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A1U8PAH4 | 1e-168 | A0A1U8PAH4_GOSHI; ethylene-responsive transcription factor 1B-like | ||||
STRING | Gorai.007G280900.1 | 1e-141 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2275 | 28 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-47 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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