PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28359_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 184aa    MW: 20415.8 Da    PI: 5.6887
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28359_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.7e-193585155
                         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  Cotton_A_28359_BGI-A2_v1.0 35 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAFCLRG 85
                                68*****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.8E-133585IPR001471AP2/ERF domain
PROSITE profilePS5103223.8413693IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-223695IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-313694IPR001471AP2/ERF domain
SMARTSM003804.7E-373699IPR001471AP2/ERF domain
CDDcd000187.56E-323794No hitNo description
PRINTSPR003673.2E-133748IPR001471AP2/ERF domain
PRINTSPR003673.2E-137595IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEQPPYTEDD LNASTASLES AMKHDTKGGG GTRHPVYRGV RKRRWGKWVS EIREPRKKSR  60
IWLGSFPVPE MAAKAYDVAA FCLRGRKAQL NFPDEVDDLP IPLTSTARDI QAAASKAAHL  120
VVSSSKKIPE SSEDGSDDFW GEIELPELMN NGGCQWNSCG WTFAGDSSWL DGETQTQQHF  180
LACL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-182997776Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636470.11e-136PREDICTED: ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI29e-61ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A2P5VV611e-134A0A2P5VV61_GOSBA; Uncharacterized protein
STRINGGorai.008G126000.11e-134(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76592439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.14e-63ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]