PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28334_BGI-A2_v1.0
Common NameF383_06277
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 279aa    MW: 32210.2 Da    PI: 5.9497
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28334_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.76.6e-51101381129
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                 lppGfrF P+deelv++yL kk++++++    ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sgyW
  Cotton_A_28334_BGI-A2_v1.0  10 LPPGFRFYPSDEELVCHYLYKKIANEEVLK-GTLVEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYW 91 
                                 79*************************655.78***************88888999*************************** PP

                         NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                                 katgkd+ v+++ ++e+vg++ktLvfy +rap+g kt W+mhe+rle
  Cotton_A_28334_BGI-A2_v1.0  92 KATGKDRMVMDSrTQEVVGMRKTLVFYMNRAPNGIKTGWIMHEFRLE 138
                                 **********9867778***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-618156IPR003441NAC domain
PROSITE profilePS5100557.62210156IPR003441NAC domain
PfamPF023658.8E-2811137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KIANEEVLKG TLVEIDLHTC EPWQLPEVAK  60
LNANEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRMV MDSRTQEVVG MRKTLVFYMN  120
RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFNKSKGG ENSNALSPHM MYETSTQTSM  180
ACGGYQQISC SLSTTPTHHN YGQSLLNLLQ SSQLKYNNNN NSLNNNEVSS KVVEDDYEFL  240
WDMNMEENSL EDHHVHGHGM ADSSLEDMRF EIDNSIIFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-49916216171NO APICAL MERISTEM PROTEIN
1ut4_B2e-49916216171NO APICAL MERISTEM PROTEIN
1ut7_A2e-49916216171NO APICAL MERISTEM PROTEIN
1ut7_B2e-49916216171NO APICAL MERISTEM PROTEIN
3swm_A2e-49916219174NAC domain-containing protein 19
3swm_B2e-49916219174NAC domain-containing protein 19
3swm_C2e-49916219174NAC domain-containing protein 19
3swm_D2e-49916219174NAC domain-containing protein 19
3swp_A2e-49916219174NAC domain-containing protein 19
3swp_B2e-49916219174NAC domain-containing protein 19
3swp_C2e-49916219174NAC domain-containing protein 19
3swp_D2e-49916219174NAC domain-containing protein 19
4dul_A2e-49916216171NAC domain-containing protein 19
4dul_B2e-49916216171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016743585.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
RefseqXP_017646383.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3
SwissprotQ84TE61e-62NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0B0PDX40.0A0A0B0PDX4_GOSAR; NAC domain-containing 21/22-like protein
TrEMBLA0A1U8NXI80.0A0A1U8NXI8_GOSHI; protein CUP-SHAPED COTYLEDON 3-like
STRINGGorai.001G178800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-92NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]