PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28238_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 173aa    MW: 19586.5 Da    PI: 9.4842
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28238_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18755254
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                                +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  Cotton_A_28238_BGI-A2_v1.0  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
                                69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.28E-33666No hitNo description
PfamPF008471.8E-11756IPR001471AP2/ERF domain
SMARTSM003804.1E-39770IPR001471AP2/ERF domain
PROSITE profilePS5103220.719764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-33764IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-20765IPR016177DNA-binding domain
PRINTSPR003672.7E-11819IPR001471AP2/ERF domain
PRINTSPR003672.7E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR  60
TNFAYNPNAP QSSSSSSKLL SATLRAKLHK CYMASLQIMK QQKVDEPRNK APAPRVIGNH  120
GIAGMGVGPL PVQEMEATWV VKKPQVLEPL EEDHVEQMIE ELLHYGSIEL CNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-16871670ATERF1
3gcc_A3e-16871670ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016755530.11e-128PREDICTED: ethylene-responsive transcription factor ERF003-like
RefseqXP_017645292.11e-128PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW58e-74ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1U8PWJ21e-126A0A1U8PWJ2_GOSHI; ethylene-responsive transcription factor ERF003-like
TrEMBLA0A2P5VQJ91e-126A0A2P5VQJ9_GOSBA; Uncharacterized protein
STRINGGorai.010G117500.11e-117(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.14e-59ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]