PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28228_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 263aa    MW: 29617.5 Da    PI: 5.0597
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28228_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.94.1e-1971292128
                         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv..ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                 p Gf F Pt ee++++yLk+ ++g++++   v+k  +iy +  ePw++    ++ +    f++ ++ k+++++r +r++ +g 
  Cotton_A_28228_BGI-A2_v1.0   7 PLGFLFLPTKEEILCDYLKPIIKGDPIPS-GVLKARHIYGAnrEPWNIF---DQ-DLLESFWVLTKLKKKSKSRIERTAGDGC 84 
                                 89*************************99.88998899866559****5...22.333356667777777899********** PP

                         NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 W ++   kev+sk +ge++g  k +++ +++++k ++ +W+mhe++l
  Cotton_A_28228_BGI-A2_v1.0  85 WFQQFA-KEVKSKdGGEVIGFDKYFTYTSKKKKK-SNGQWIMHEFSL 129
                                 *98877.56666549999*********9655555.89********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-223148IPR003441NAC domain
PROSITE profilePS5100523.2336148IPR003441NAC domain
PfamPF023651.1E-127129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MPQLQIPLGF LFLPTKEEIL CDYLKPIIKG DPIPSGVLKA RHIYGANREP WNIFDQDLLE  60
SFWVLTKLKK KSKSRIERTA GDGCWFQQFA KEVKSKDGGE VIGFDKYFTY TSKKKKKSNG  120
QWIMHEFSLK DQEAVGLSDL VICEIKNKDA AVVSSDYEES EGEIKKNKKR KLMAVPLDST  180
NDFATMPVGN QTFDYMAPEI GGFSPFSACL DQQPNPWTSA GVDGNLGVPD YNSHHLEEAN  240
EAGDANLFFT FQELDNILNS NQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164171KKNKKRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618043.10.0PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A1U8IHN00.0A0A1U8IHN0_GOSHI; NAC domain-containing protein 83-like
STRINGGorai.013G066200.11e-152(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16345312
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.16e-11NAC domain containing protein 32