PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28142_BGI-A2_v1.0
Common NameF383_19278
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 351aa    MW: 38885.8 Da    PI: 6.5005
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28142_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.2e-16226323195
                                 EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT- CS
                          B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegD 78 
                                 f+k+lt sdv ++ grlvlpk++ae++  +++ ++++ lt++d++g+ Wev ++y  + ++++yvl+ G k++    + ++gD
  Cotton_A_28142_BGI-A2_v1.0 226 FEKKLTASDVDTRnGRLVLPKRCAEAYfpKISGQQGIFLTVQDTKGNDWEVFYRYwsNTNGKMYVLE-GLKDYMIMMEWEAGD 307
                                 99********98879*************9555558999*****************544444458888.*************** PP

                                 EEEEEE-SS.SEE..EEE CS
                          B3  79 fvvFkldgr.sefelvvk 95 
                                 +v+F+  +r ++++l+++
  Cotton_A_28142_BGI-A2_v1.0 308 TVTFY--KReEDEKLFMG 323
                                 *****..44366655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-25219330IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-18223324IPR015300DNA-binding pseudobarrel domain
CDDcd100179.59E-21224326No hitNo description
SMARTSM010199.9E-13226327IPR003340B3 DNA binding domain
PfamPF023622.4E-13226323IPR003340B3 DNA binding domain
PROSITE profilePS508639.263227328IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAAPTVFIGT CFHCQSQSDA FFSGWQLRDG SFALLCHPCG SAFVEGRFCE TFHPEASGWR  60
ECDSCNKGIH CGCIMAAHSY AILDFGGVKC LECCLNEALA LHRNSPTFSN PEEMQASDSH  120
PKASDDTEET VTGVDPIASP DSVALNASPD KIGTPTSGAV PAAETEGESS VNSPAGTKKS  180
RKKKGRKNRK DASKQHQIQA RYSPKTSPEE LREICRQAKS SLIPLFEKKL TASDVDTRNG  240
RLVLPKRCAE AYFPKISGQQ GIFLTVQDTK GNDWEVFYRY WSNTNGKMYV LEGLKDYMIM  300
MEWEAGDTVT FYKREEDEKL FMGFKKYQAP ESAQKNAVTM SSLFQSFNSV E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-342033261123B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641954.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like
TrEMBLA0A0B0NIG70.0A0A0B0NIG7_GOSAR; Uncharacterized protein
STRINGGorai.002G075900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1811179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.13e-35HSI2-like 1