PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_28135_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 179aa MW: 19978.6 Da PI: 8.7074

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_28135_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0015	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs L H+r+H Cotton_A_28135_BGI-A2_v1.0 90 HECSICGLEFSIGQALGGHMRRH 112 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.0E-8	44	112	No hit	No description
Pfam	PF13912	2.3E-12	45	70	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.31	46	68	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.159	46	73	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	48	68	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.6E-10	89	114	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.66	90	117	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.32	90	112	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	92	112	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MKRSFASEME NNLALANCLM LLSQGRNQYD HTIFNDSNNN NPTRVFECKT CNRQFASFQA 60 LGGHRASHKK PKLLDGSSTE NQPPAKPKTH ECSICGLEFS IGQALGGHMR RHRGGLSENH 120 HQYGPLSSSS SSQEMVTTPI VKKSNSRRVL CLDLNLTPLE NDWELFKLGK AALPIDCFF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017605738.1	1e-132	PREDICTED: zinc finger protein ZAT12-like
TrEMBL	A0A2P5X739	1e-131	A0A2P5X739_GOSBA; Uncharacterized protein
STRING	Gorai.011G254200.1	1e-130	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM531	28	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	1e-31	C2H2 family protein