PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_27957_BGI-A2_v1.0
Common NameF383_32547
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 288aa    MW: 32778.8 Da    PI: 6.5816
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_27957_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.5e-1883136356
                                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Cotton_A_27957_BGI-A2_v1.0  83 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 136
                                 456899***********************************************9 PP
2HD-ZIP_I/II130.18.8e-4282172191
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                 ekkrrl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lk++y+a+k++n++L+++
  Cotton_A_27957_BGI-A2_v1.0  82 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKKQYEAIKADNDALQAQ 164
                                 69********************************************************************************* PP

                 HD-ZIP_I/II  84 veeLreel 91 
                                 +++L++e+
  Cotton_A_27957_BGI-A2_v1.0 165 NQKLHAEI 172
                                 *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-1967140IPR009057Homeodomain-like
PROSITE profilePS5007117.32978138IPR001356Homeobox domain
SMARTSM003891.8E-1781142IPR001356Homeobox domain
CDDcd000864.13E-1683139No hitNo description
PfamPF000462.9E-1583136IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-1985145IPR009057Homeodomain-like
PRINTSPR000311.1E-5109118IPR000047Helix-turn-helix motif
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5118134IPR000047Helix-turn-helix motif
PfamPF021833.2E-16138179IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSCNGMAFFP ANFMLQTPHE EDHHHQPPTS INQMLPSCTP QDFHGVAPFL GKRSISFSGI  60
DHVCEEGNGE DDLSDDGSQA GEKKRRLNME QVKTLEKNFE LGNKLEPERK MQLARALGLQ  120
PRQIAIWFQN RRARWKTKQL EKDYDLLKKQ YEAIKADNDA LQAQNQKLHA EILALKGKEP  180
TESINLNKET EGSCSNRSEN SSDVKLGMSR TPTVIDSHPT SCRTLFPTSI RPTTAVAQLF  240
QTSSSRPDNH LQCQKMDQIV KEEGLGNMFC NIEDQTGFWP WLEQHHFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017626534.10.0PREDICTED: homeobox-leucine zipper protein ATHB-13-like
SwissprotQ8LC031e-117ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A0B0N0370.0A0A0B0N037_GOSAR; Homeobox-leucine zipper ATHB-13-like protein
STRINGGorai.013G083600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26332770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-119HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]