PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_27843_BGI-A2_v1.0
Common NameF383_01306
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 1141aa    MW: 127542 Da    PI: 6.8389
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_27843_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.26.4e-18140255199
                                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE................EEETTEEEE-T CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliy..............rkksgryvltk 63 
                                 f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ + W++++iy              + +++r++lt+
  Cotton_A_27843_BGI-A2_v1.0 140 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSMQPPA-QELVARDLHENAWTFRHIYrgivldialfsflkQSQPKRHLLTT 221
                                 99*****************************9445444.48*****************************98888899***** PP

                                 THHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                          B3  64 GWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                 GW+ Fv+ ++L +gD+v+F +d   + +l+++++r+
  Cotton_A_27843_BGI-A2_v1.0 222 GWSVFVSTKRLFAGDSVLFIRD--AKSQLLLGLRRA 255
                                 ********************54..455568888886 PP
2Auxin_resp105.75.4e-35280371183
                  Auxin_resp   1 aahaastksvFevvYnPr.........astseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrW 74 
                                 aahaa++ s+F+++YnPr         as+seFvv+++k++k+++++vs+GmRf+m+fete+s  rr++Gtv+g+sdldpvrW
  Cotton_A_27843_BGI-A2_v1.0 280 AAHAAANFSPFTIFYNPRtqkfynfdrASPSEFVVPLAKYNKTMYTQVSLGMRFRMMFETEESGVRRYMGTVTGISDLDPVRW 362
                                 79***************7333333333689***************************************************** PP

                  Auxin_resp  75 pnSkWrsLk 83 
                                 +nS+Wr+L+
  Cotton_A_27843_BGI-A2_v1.0 363 KNSQWRNLQ 371
                                 *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-39130283IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-37132269IPR015300DNA-binding pseudobarrel domain
CDDcd100179.57E-15139254No hitNo description
PfamPF023621.2E-15140255IPR003340B3 DNA binding domain
SMARTSM010191.3E-12140256IPR003340B3 DNA binding domain
PROSITE profilePS5086310.969140256IPR003340B3 DNA binding domain
PfamPF065071.5E-29280371IPR010525Auxin response factor
PfamPF023091.9E-910111100IPR033389AUX/IAA domain
PROSITE profilePS5174525.67410141107IPR000270PB1 domain
SuperFamilySSF542771.05E-710291092No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1141 aa     Download sequence    Send to blast
MKAPPTGFLA NPAEAGDRKS INSELWHACA GPLVSLPPIG SLVVYFPQGH SEQVAASMQK  60
ETDFIPSYPN LPSKLICVLH NVTLHVRMSI PPLSQANFAD PETDEVYAQM TLQPVNKYDK  120
EALLASDMGL KQSRQPAEFF CKTLTASDTS THGGFSVPRR AAEKIFPSLD FSMQPPAQEL  180
VARDLHENAW TFRHIYRGIV LDIALFSFLK QSQPKRHLLT TGWSVFVSTK RLFAGDSVLF  240
IRDAKSQLLL GLRRANRQQP ALSSSVISSD SMHIGILAAA AHAAANFSPF TIFYNPRTQK  300
FYNFDRASPS EFVVPLAKYN KTMYTQVSLG MRFRMMFETE ESGVRRYMGT VTGISDLDPV  360
RWKNSQWRNL QVGWDESTAG ERPRRVSVWE IEPVVSPFFI CPPPFFRPRF PKQPGMPDDD  420
SDVENAFKRA MPWLGDDFGM RGTPSSIFPG LSLVQWMNMQ QSNQFPAAQS GFFPSTVSSN  480
LLHSNLSIDD PSKLLNFQAP VLPAPNMQFN KANPNQVNQL PQAPTTWSQQ ILQTPVNQHQ  540
QQQPQQQLQQ QQPQQPQQQP QPQSHLLHQQ QPQPQPSPKQ QQHIHQEQRQ QPQQQQPLQQ  600
QPTLPPQVTN GIVAPNQISN QNLHQPAVYS HLQQQQLLTS NSLSTQTTLS AHMTSYPLTS  660
LPQDTRVQQQ MEQQPNLMQR QQQQTQLQQS LSQRTQQQPQ ILQLSQQGLS EQLQLQLLQK  720
LQQQQQQSAQ QLLSAAGSLL QPPMLQQQQT HQQNQPLQQL PLSQSQVQPL GSNGFSTSMF  780
VQPQQLSVHQ SQSQSKQLMA MRSNSGLIDG DAPPSTLSST NNCQVSPSNL INRSHHVPSI  840
LMTDPVVEPP STLAQELLSK PDIQIKHEPP TSRGLDQSKY KSSVTDQLEA SSSGTSYCLD  900
AGTIQHNASL SFLEGDVQSH SRNNLPFTAN IDGLAPETLL TREYDSQKDL QNMLSNYGGN  960
PRDIDTELST AAISCQSFGV PNIPFKTGCS NDVAINETGV LNGGLWTNQT QRMRTYTKVQ  1020
KRGSVGRSID VTRYKGYDEL RHDLVRMFGI EGQLEDPQSS DWKLVYVDHE NDILLVGDDP  1080
WEEFVSCVQS IKILSSAEVQ QMSLDGNLGN VSVPNQACSG TENGNAWRGH YDDTSAVSFN  1140
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1581439243388Auxin response factor 5
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5273271e-100HQ527327.1 Gossypium herbaceum clone NBRI_E_3228 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017649494.10.0PREDICTED: auxin response factor 19-like isoform X1
TrEMBLA0A0B0MKG00.0A0A0B0MKG0_GOSAR; Auxin response factor
STRINGGorai.009G037100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26292665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19