PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_27817_BGI-A2_v1.0
Common NameF383_09177
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 263aa    MW: 29578.4 Da    PI: 7.9848
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_27817_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81.1e-19118172256
                                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 rk+ ++tkeq  +Le+ F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Cotton_A_27817_BGI-A2_v1.0 118 RKKLKLTKEQSSVLEDSFKEHSTLNPKQKQALAEQLNLRPRQVEVWFQNRRARTK 172
                                 788899***********************************************98 PP

2HD-ZIP_I/II118.24.4e-38118206190
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                 +kk++l+keq+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d e Lk+++++lkeen+rL+ke
  Cotton_A_27817_BGI-A2_v1.0 118 RKKLKLTKEQSSVLEDSFKEHSTLNPKQKQALAEQLNLRPRQVEVWFQNRRARTKLKQTEVDRELLKKCCETLKEENKRLHKE 200
                                 69********************************************************************************* PP

                 HD-ZIP_I/II  84 veeLree 90 
                                  +eL+ +
  Cotton_A_27817_BGI-A2_v1.0 201 LQELK-S 206
                                 ****9.4 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.475114174IPR001356Homeobox domain
SMARTSM003892.1E-17116178IPR001356Homeobox domain
SuperFamilySSF466892.72E-18116181IPR009057Homeodomain-like
CDDcd000862.00E-16117175No hitNo description
PfamPF000464.8E-17118172IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-18118172IPR009057Homeodomain-like
PROSITE patternPS000270149172IPR017970Homeobox, conserved site
PfamPF021831.1E-6174207IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.1E-18174217IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGLDDICNTG LCLGLGIGCL VKQENISQSD HHQQKKKKPF LKHDQLFPSL SLGPSHDVHG  60
QGESIDLHQR QASSLSLSAV SSFSNSSVKR ERDFGGEEVE LERVCSRVSD EDEEGSPRKK  120
LKLTKEQSSV LEDSFKEHST LNPKQKQALA EQLNLRPRQV EVWFQNRRAR TKLKQTEVDR  180
ELLKKCCETL KEENKRLHKE LQELKSLKLT ASYYMHLPAA TLTLCPSCER VDNGGEAPST  240
SSPFTMGQKS HFFSSFTHPS AAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166174RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016748990.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
RefseqXP_017605418.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
RefseqXP_017605431.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466043e-83HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A0B0PA770.0A0A0B0PA77_GOSAR; Homeobox-leucine zipper HAT22-like protein
TrEMBLA0A1U8PCX70.0A0A1U8PCX7_GOSHI; homeobox-leucine zipper protein HAT22-like
STRINGGorai.009G223100.11e-143(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2233535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-76HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]