PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_27805_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 268aa    MW: 30136.8 Da    PI: 4.5461
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_27805_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.95.6e-21111332128
                         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv..ePwdLpkkvkaeekew.yfFskrdkkyatgkrknratksg 81 
                                 p+GfrF Pt ee++ +yL++ ++g++++   v+ e+diy +  ePw++    ++++ e  +  +k +k  ++++r +r++ +g
  Cotton_A_27805_BGI-A2_v1.0  11 PVGFRFLPTKEEILRDYLQPFIKGDPIPS-GVMMELDIYGSnrEPWNIF---DQDSAESlWVITKLKK--KSKSRIERTAGDG 87 
                                 89**************************9.99******977559****5...2333344134444433..3578********* PP

                         NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  W ++  ++   s +ge++g  k +++ +++++k ++ +W+mhe++l
  Cotton_A_27805_BGI-A2_v1.0  88 CWLQQYIKEVKNSDGGEVIGYDKYFTYSRKKSQK-SNGQWIMHEFSL 133
                                 ***998866555669999*********9766666.89********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-233151IPR003441NAC domain
PROSITE profilePS5100525.75410152IPR003441NAC domain
PfamPF023651.2E-1311133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSTVRPQLEI PVGFRFLPTK EEILRDYLQP FIKGDPIPSG VMMELDIYGS NREPWNIFDQ  60
DSAESLWVIT KLKKKSKSRI ERTAGDGCWL QQYIKEVKNS DGGEVIGYDK YFTYSRKKSQ  120
KSNGQWIMHE FSLKDQEALG LSDFVICEIK NTDAAVVSPV YEECEGEINK NKKCKLMEAP  180
STSTNDFAFL PVGNQAFDSM APELGGFSPS PPFTACLNQQ PNPWTSAGVG GNLGVPDYNS  240
HHPEEAREDV NANLYITLQE LDNFLNSD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5963951e-45JX596395.1 Gossypium hirsutum clone NBRI_GE32970 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017617748.10.0PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A2P5Y0P60.0A0A2P5Y0P6_GOSBA; Uncharacterized protein
STRINGGorai.011G257000.11e-156(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16345312
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-15NAC domain containing protein 83