PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_27634_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 183aa MW: 21056.9 Da PI: 9.7427 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 36 | 80 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ ++v++++++G++ W+tIa++++ gRt++++k++w+++ Cotton_A_27634_BGI-A2_v1.0 36 RGHITPQEEGIIVELHALWGNK-WSTIAKYLP-GRTDNEIKNYWRTH 80 6778******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.972 | 1 | 30 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-10 | 16 | 42 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.65E-20 | 16 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.54 | 31 | 85 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-13 | 35 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 36 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.07E-10 | 40 | 81 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-20 | 43 | 80 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MMVWGAPKQA WRKGLNRSGK SCRLRWVNYL RPGLKRGHIT PQEEGIIVEL HALWGNKWST 60 IAKYLPGRTD NEIKNYWRTH FMKKERSAQR QQKRKALKLK QQPPQTNKEE TAAVRDGGGA 120 TDHEGGMCEE AATLLDDYLM NEGLWWNQQQ QANNIAMQMQ QVACNCYGGD VISNEYNGVG 180 YIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-17 | 17 | 84 | 40 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX590828 | 6e-68 | JX590828.1 Gossypium hirsutum clone NBRI_GE25823 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017636696.1 | 1e-128 | PREDICTED: transcription factor MYB59-like | ||||
Swissprot | Q4JL84 | 4e-37 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | A0A2P5YQ23 | 1e-127 | A0A2P5YQ23_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G090100.1 | 1e-113 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 1e-44 | myb domain protein 121 |
Publications ? help Back to Top | |||
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