PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_27565_BGI-A2_v1.0

Common Name

F383_14764

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 299aa MW: 33316.2 Da PI: 6.315

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_27565_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.7	1.4e-14	246	289	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++L+k+ Cotton_A_27565_BGI-A2_v1.0 246 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKR 289 79****************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.1E-14	236	289	No hit	No description
SMART	SM00338	3.1E-10	242	297	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.691	244	289	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.19E-10	246	289	No hit	No description
CDD	cd14707	1.22E-22	246	288	No hit	No description
Pfam	PF00170	2.6E-12	246	289	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	249	264	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MGSQGDSGSN GKQLQFQQLT QQNSMYSLTL DEVQNQLGDL GKPLSSMNLD ELLKNVWTVE 60 ANQTFGMDSD GTMLTNQASL QRQASLSLTG ALSKKTVDEV WRDIQQSKND GEKKSRERQP 120 TLGEMTLEDF LVKAGVVAEA STDGDAGASI AGVDLSVAPQ FAQQGQWMQY PQPQYHHPQQ 180 SIMGVYMPSQ PMPRPLDLGT AAVIDVSYPE NQVPLHSPLM GTLSDTQASG RKRGASEDIV 240 EKNVERRQKR MIKNRESAAR SRARKQAYTN ELENKVSRLE EENERLRKRK VRSVLQDTF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	284	291	RLRKRKVR

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017650197.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_017650198.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_017650199.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_017650200.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	3e-84	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A0B0MB10	0.0	A0A0B0MB10_GOSAR; Abscisic acid-insensitive 5-like protein 2
STRING	Gorai.009G301200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1884	28	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	8e-70	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]