PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_27430_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 322aa    MW: 36666.1 Da    PI: 8.2485
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_27430_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161462148
                                TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                +g+W+teEd +l ++++++G+g +W + +++ g++R++k+c++rw++yl
  Cotton_A_27430_BGI-A2_v1.0 14 KGPWSTEEDSKLREYIEKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                                79*********************************************97 PP
2Myb_DNA-binding41.23.7e-1369111246
                                 SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 g +T eEd ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
  Cotton_A_27430_BGI-A2_v1.0  69 GEFTDEEDRIICSLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                                 78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.238962IPR017930Myb domain
SuperFamilySSF466898.59E-2811109IPR009057Homeodomain-like
SMARTSM007172.4E-121364IPR001005SANT/Myb domain
PfamPF002491.9E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-241569IPR009057Homeodomain-like
CDDcd001676.30E-91662No hitNo description
PROSITE profilePS5129422.54963117IPR017930Myb domain
SMARTSM007179.7E-1367115IPR001005SANT/Myb domain
PfamPF002497.4E-1269111IPR001005SANT/Myb domain
CDDcd001679.71E-970113No hitNo description
Gene3DG3DSA:1.10.10.605.2E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSTE EDSKLREYIE KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FTDEEDRIIC SLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMAM  120
SMTSQPHRKP PPFPSSHHTP SVSFPSLSSL YKHCTTYQDP TRSFTAFEPV ASVQADLLNN  180
GNTTLPTNSS LIHTPEALVN YMQYYPVKEN FLMFGSESSC TSSDGSSGHI SFGREMKQEN  240
MSHFQGFCAT NGYEDNHNFM LNPGTNNGGK NVNQWAEKPR EYNLENDLED FKRLISSSSN  300
NCCNNNFIDE NKTQEKVMYF YY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27141177108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0527220.0KM052722.1 Gossypium hirsutum RAX-like transcription factor RAX3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645285.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A1U8PF680.0A0A1U8PF68_GOSHI; transcription factor RAX2-like
STRINGGorai.009G110800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-76myb domain protein 36