PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_27309_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 257aa MW: 28612.2 Da PI: 7.5473 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.8e-18 | 19 | 68 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +g+WvAeI+d + ++ r +lg+f taeeAa+a+++a+ l+g Cotton_A_27309_BGI-A2_v1.0 19 KFVGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 68 799******.7*********32...35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.37E-19 | 19 | 77 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.68E-33 | 19 | 78 | No hit | No description |
Pfam | PF00847 | 8.8E-13 | 19 | 68 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-37 | 19 | 82 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-28 | 19 | 77 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.823 | 19 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-8 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-8 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0035865 | Biological Process | cellular response to potassium ion | ||||
GO:0048528 | Biological Process | post-embryonic root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MEHQVQTQQK GKFKERRNKF VGVRQRPSGK WVAEIKDTTQ KIRMWLGTFE TAEEAARAYD 60 EAACLLRGSN TRTNFATHVP TDSHLSLKIR NLLNHKKSLR QGKNNNSNST TNSNKITIKA 120 STIVGSNDSI NSSISNAGTH SFMCDSLVFD GAYRPELSGF VGELGPDPSQ LGQSWMIPTG 180 FDQIPLSQGL ELPQEVGVLP QGIDQELMEF ERLKVERQVS ATFYAMNGVN GYLQSAAFDP 240 NDAIWDLPTL CHLFCQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-15 | 20 | 79 | 3 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00521 | DAP | Transfer from AT5G19790 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM466283 | 4e-42 | AM466283.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X245563.19, clone ENTAV 115. | |||
GenBank | FQ396586 | 4e-42 | FQ396586.1 Vitis vinifera clone SS0AEB9YH10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017646534.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-11-like | ||||
Swissprot | A0A1X9PY88 | 3e-78 | ERN1_LOTJA; Ethylene-responsive transcription factor ERN1 | ||||
TrEMBL | A0A1U8N391 | 0.0 | A0A1U8N391_GOSHI; ethylene-responsive transcription factor RAP2-11-like | ||||
STRING | Gorai.013G244500.1 | 1e-168 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7526 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-55 | related to AP2 11 |
Publications ? help Back to Top | |||
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