PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_27227_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 309aa MW: 34245.5 Da PI: 9.2635 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 99.4 | 6.5e-31 | 49 | 168 | 2 | 108 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i el+ ++ ++ +++ ++++ ++++ Cotton_A_27227_BGI-A2_v1.0 49 FGGKDRHSKVFTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNEAKHEIEELPPLPIPQGNFAlNPQMPLNASQ 131 689*************************************************************8888887774444444444 PP TCP 84 nsssg...............kaaksaakskksqksaasal 108 +++++ + ++ k++k++++a++ + Cotton_A_27227_BGI-A2_v1.0 132 QPNKQdptggfwrakskdivR---ESSKGSKRDEDASEGH 168 444445566788766653331...2223333333333333 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.564 | 51 | 109 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.8E-28 | 51 | 144 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 309 aa Download sequence Send to blast |
MIPGSEEAGS PIQEGKEDES SNKVRKGAST SSPLLRLKDP RIVRVSRAFG GKDRHSKVFT 60 IRGLRDRRVR LSVPTAIQLY DLQDRLGLNQ PSKVVDWLLN EAKHEIEELP PLPIPQGNFA 120 LNPQMPLNAS QQPNKQDPTG GFWRAKSKDI VRESSKGSKR DEDASEGHQV QTDYGLQRSN 180 HSPMPALLNN AVSMPMPMPM PYGSYYHFEP SNFPLPHLGS HGFVAPQTEE VHNFNVVPLS 240 STLSLSSGSQ NHFQMLSSGA QNPFANPPQY SITQPDLRPF HLSIAPRLLP HSLNINGSQP 300 GKEDEFPSK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-18 | 56 | 110 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-18 | 56 | 110 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016751395.1 | 0.0 | PREDICTED: transcription factor TCP5-like | ||||
Refseq | XP_017613298.1 | 0.0 | PREDICTED: transcription factor TCP5-like | ||||
Swissprot | Q9S7W5 | 8e-46 | TCP13_ARATH; Transcription factor TCP13 | ||||
TrEMBL | A0A1U8PJN0 | 0.0 | A0A1U8PJN0_GOSHI; transcription factor TCP5-like | ||||
STRING | Gorai.012G048500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9134 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02150.1 | 5e-39 | plastid transcription factor 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|