PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_27089_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 277aa MW: 31153.4 Da PI: 8.3832 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 112.4 | 2.1e-35 | 49 | 108 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e lkcprCds+ntkfCyynny+ sqPryfCk+C+r+WtkGG lrnvPvGggr+++++++ Cotton_A_27089_BGI-A2_v1.0 49 EPPLKCPRCDSSNTKFCYYNNYNKSQPRYFCKTCKRHWTKGGNLRNVPVGGGRKNKRHQT 108 6679************************************************88888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-22 | 45 | 105 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.7E-31 | 51 | 105 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.251 | 52 | 106 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 54 | 90 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MGLSCKQVSS DEVEWIQGQS LLQAPTMERP KASSMKRRHH QENQLQQSEP PLKCPRCDSS 60 NTKFCYYNNY NKSQPRYFCK TCKRHWTKGG NLRNVPVGGG RKNKRHQTSA AASASKTTTT 120 TIKSSTSSAI QPHQLPPADQ KYIPNIKFHS SLQQNSVNCR NSERENFSTN NGVCLDSTMS 180 QGLQTPFPLP FPFSSSSSYS LETSPSSISA SFQSSSLYNY SGETREDPTG SQTWQEPITS 240 NGIEMANYWN WDDIDALVST DLNIPWDDSE IKPWKDL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ393788 | 4e-36 | GQ393788.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0753 SSR marker CGR5843 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017611955.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.4-like | ||||
TrEMBL | A0A1U8PV96 | 0.0 | A0A1U8PV96_GOSHI; dof zinc finger protein DOF1.4-like | ||||
STRING | Gorai.010G152100.1 | 1e-162 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1269 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 9e-29 | TARGET OF MONOPTEROS 6 |