PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_27084_BGI-A2_v1.0
Common NameF383_08377
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 275aa    MW: 31300.2 Da    PI: 6.6726
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_27084_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.9e-1879131456
                                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 + +++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rq+ +WFqNrRa++k
  Cotton_A_27084_BGI-A2_v1.0  79 KKRLNLEQVKALEKSFELGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWK 131
                                 4568889*********************************************9 PP
2HD-ZIP_I/II128.23.4e-4177167191
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                 ekk+rl+ eqvk+LE+sFe  +kLeperKv+la++Lglqprq+a+WFqnrRAR+ktkqlEkdy+aLk++++alk++n++L+++
  Cotton_A_27084_BGI-A2_v1.0  77 EKKKRLNLEQVKALEKSFELGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYDALKKQFEALKADNDALQAQ 159
                                 69********************************************************************************* PP

                 HD-ZIP_I/II  84 veeLreel 91 
                                 +++L++el
  Cotton_A_27084_BGI-A2_v1.0 160 NKKLNAEL 167
                                 *****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.46E-1969135IPR009057Homeodomain-like
PROSITE profilePS5007116.76373133IPR001356Homeobox domain
SMARTSM003891.0E-1776137IPR001356Homeobox domain
CDDcd000861.65E-1678134No hitNo description
PfamPF000463.3E-1579131IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.1E-1981141IPR009057Homeodomain-like
PRINTSPR000319.4E-6104113IPR000047Helix-turn-helix motif
PROSITE patternPS000270108131IPR017970Homeobox, conserved site
PRINTSPR000319.4E-6113129IPR000047Helix-turn-helix motif
PfamPF021834.4E-14133173IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAFPPHAFMF QPHEDHHNDH LPSPTSLNFL PSCPPQLFHG GGAPFMMKRS VSFSGVDKSE  60
EVHGDDELSD DGSHLGEKKK RLNLEQVKAL EKSFELGNKL EPERKVQLAK ALGLQPRQIA  120
IWFQNRRARW KTKQLEKDYD ALKKQFEALK ADNDALQAQN KKLNAELLAL KTKDSNETSC  180
IKKENDCSWS YGSDNNSCDV NLDISRTPLM SSSKHLFPPS VRPTSMTQLL QGSSRPDLQC  240
VKLDQVVQEE SFCNMFNGVD EQQAFWPWSE QQSFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125133RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00322DAPTransfer from AT3G01220Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1513090.0EF151309.1 Gossypium hirsutum homeobox protein (HB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609830.10.0PREDICTED: homeobox-leucine zipper protein HAT7-like
SwissprotQ8LAT03e-97ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A0B0PXN90.0A0A0B0PXN9_GOSAR; Homeobox-leucine zipper ATHB-20-like protein
STRINGGorai.006G022100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.17e-91homeobox protein 20