PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_27060_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 553aa MW: 58300.7 Da PI: 7.2691

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_27060_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.7	7.2e-41	171	275	3	113
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasn 84 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ Cotton_A_27060_BGI-A2_v1.0 171 PVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGST 253 5699****************************************************************999777777777775 PP TCP 85 sssg...........kaaksaakskksqksaasalnlake 113 s++ + l+la + Cotton_A_27060_BGI-A2_v1.0 254 LSAPpsksaphafhgA------------------LALASH 275 4444322222222220..................222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.7E-39	175	279	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.496	176	230	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence Send to blast
MELTDLQSNK QTKNNNSSSS SNNNNNNSAE PHHQSLQQHH LQHQKQSASP QLVVPFDGTR 60 SSGPSSGNPF NMGSISHLHP HHPFHLLLHP ASSTTTTTTT PPLPSSSSSS SSSSSASTTT 120 TNPPQLVDAS LAIATRSTSH NIDSKNQTDL PLSSTTTPAS TTTTTTTANP PVKRSTKDRH 180 TKVDGRGRRI RMPATCAARV FQLTRELGHK SDGETIEWLL QQAEPAIIAA TGTGTIPANF 240 STLNISLRSS GSTLSAPPSK SAPHAFHGAL ALASHHHHHH PYEEGFAHSA LLGFQQQHQQ 300 HLLTADQIAE ALPGGGGGDG GNLSESYMRK RFREDLFKDD DQQQGESGSG GGDGSPIKAF 360 KSGLTQLSKP QQDAGSSALP RPSNILPGTA MWAVAPAPSS GAGSTFWMLP MSAGAGGPSV 420 APSAATGAGP SDHPQMWPFG TANQASGNTL QAPLHFLPRF NLPGNVEFQG GRASPLQLGS 480 MLMQQQHQQQ QPHHHLGLGM SDSNLGMLAA LNAYSRGGSN VNSDQNNPLE HHHQQHQPQG 540 TDSGDDQDPN TSQ

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence Send to blast

MELTDLQSNK QTKNNNSSSS SNNNNNNSAE PHHQSLQQHH LQHQKQSASP QLVVPFDGTR  60
SSGPSSGNPF NMGSISHLHP HHPFHLLLHP ASSTTTTTTT PPLPSSSSSS SSSSSASTTT  120
TNPPQLVDAS LAIATRSTSH NIDSKNQTDL PLSSTTTPAS TTTTTTTANP PVKRSTKDRH  180
TKVDGRGRRI RMPATCAARV FQLTRELGHK SDGETIEWLL QQAEPAIIAA TGTGTIPANF  240
STLNISLRSS GSTLSAPPSK SAPHAFHGAL ALASHHHHHH PYEEGFAHSA LLGFQQQHQQ  300
HLLTADQIAE ALPGGGGGDG GNLSESYMRK RFREDLFKDD DQQQGESGSG GGDGSPIKAF  360
KSGLTQLSKP QQDAGSSALP RPSNILPGTA MWAVAPAPSS GAGSTFWMLP MSAGAGGPSV  420
APSAATGAGP SDHPQMWPFG TANQASGNTL QAPLHFLPRF NLPGNVEFQG GRASPLQLGS  480
MLMQQQHQQQ QPHHHLGLGM SDSNLGMLAA LNAYSRGGSN VNSDQNNPLE HHHQQHQPQG  540
TDSGDDQDPN TSQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527491	0.0	HQ527491.1 Gossypium herbaceum clone NBRI_C_7085 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017623393.1	0.0	PREDICTED: transcription factor TCP8
TrEMBL	A0A0B0NV18	0.0	A0A0B0NV18_GOSAR; Transcription factor TCP8-like protein
STRING	Gorai.002G215000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10218	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	4e-59	TCP family protein