PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_27019_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 304aa    MW: 34571.8 Da    PI: 7.0514
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_27019_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.3e-182673148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                rg+WT eEd ll ++++++G g+W+  a++ g++Rt+k+c++rw++yl
  Cotton_A_27019_BGI-A2_v1.0 26 RGPWTLEEDTLLTHYIARHGEGRWNMLAKCAGLKRTGKSCRLRWLNYL 73
                                89********************************************97 PP
2Myb_DNA-binding52.61e-1679122146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Cotton_A_27019_BGI-A2_v1.0  79 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 122
                                 7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6752173IPR017930Myb domain
SuperFamilySSF466895.24E-3124120IPR009057Homeodomain-like
SMARTSM007175.8E-152575IPR001005SANT/Myb domain
PfamPF002491.0E-152673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-232780IPR009057Homeodomain-like
CDDcd001679.59E-122873No hitNo description
PROSITE patternPS0017504150IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.75174128IPR017930Myb domain
SMARTSM007172.7E-1578126IPR001005SANT/Myb domain
PfamPF002491.0E-1579122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2381127IPR009057Homeodomain-like
CDDcd001677.75E-1283122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MRAAMPPINT KNMSTPLEEE ESELRRGPWT LEEDTLLTHY IARHGEGRWN MLAKCAGLKR  60
TGKSCRLRWL NYLKPDIKRG NLTPQEQLLI LELHSKWGNR WSKIAQHLPG RTDNEIKNYW  120
RTRVQKQARQ LNIESNSQRF LDAVRCFWMP RLVQKVEQAS PSSSSSSSSS YLKEMCTQSS  180
VPSQLSSCCT VPSFPTFSPL ANKTTDISNS SSVTTQNICP TDSINISDQT EIPQHLTGSN  240
VYGHTTLDQC YNIDSNDYGM EGISFASMSA VGFYEGTSSE GNWMCTEMSD NLWNMDDIWQ  300
LRSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-252312824128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2430920.0AC243092.1 Gossypioides kirkii clone GKH058K14-jmr, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645384.10.0PREDICTED: myb-related protein 305-like
SwissprotQ9C9G72e-91MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A1U8LA930.0A0A1U8LA93_GOSHI; myb-related protein 305-like
STRINGGorai.002G218600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.13e-91myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]