PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26997_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 229aa    MW: 25639.6 Da    PI: 6.5475
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26997_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-19101151356
                         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                 y+GVr+++ +g ++AeIrdp+ ng  +r++lg++ t+e+Aa a+++a+ +++g+
  Cotton_A_26997_BGI-A2_v1.0 101 YRGVRRRP-WGTYAAEIRDPKRNG--ARIWLGTYETPEGAALAYDRAAFNMRGA 151
                                 9*******.**********98776..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.209100158IPR001471AP2/ERF domain
CDDcd000181.12E-29100160No hitNo description
PfamPF008475.1E-13100150IPR001471AP2/ERF domain
SMARTSM003803.6E-34100164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-31100159IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-21101159IPR016177DNA-binding domain
PRINTSPR003672.5E-12101112IPR001471AP2/ERF domain
PRINTSPR003672.5E-12140160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MYCDSASNFN LSLLDSIRQY LLEDDFDTIP GQVVENLPKR ELHDDAINVD QWINFDQLSD  60
AAEEKVAVNN VSFPSLEVTS EMETTAAVPT KPQAPPKKVN YRGVRRRPWG TYAAEIRDPK  120
RNGARIWLGT YETPEGAALA YDRAAFNMRG AKAKLNFPHL IGSNQVEPVR VSSNKRRSPE  180
TSSSCSSAQS PSSPSSTLTS DDVTPKSKRR SVMNRFSKTE FEVDMYQLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2897165270ATERF1
3gcc_A4e-2897165270ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5864363e-70JX586436.1 Gossypium hirsutum clone NBRI_GE20263 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017617580.11e-171PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLA0A2P5Y2D11e-169A0A2P5Y2D1_GOSBA; Uncharacterized protein
STRINGGorai.004G070500.11e-146(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-41ethylene-responsive element binding factor 13