PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_26993_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 193aa MW: 21509.8 Da PI: 4.9037 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.5 | 3.8e-19 | 100 | 150 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g ++AeIrdp+ ng +r++lg++ t+e+Aa a+++a+ +++g+ Cotton_A_26993_BGI-A2_v1.0 100 YRGVRRRP-WGTYAAEIRDPKRNG--ARIWLGTYETPEGAALAYDRAAFNMRGA 150 9*******.**********98776..*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.20E-29 | 99 | 159 | No hit | No description |
PROSITE profile | PS51032 | 23.209 | 99 | 157 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-34 | 99 | 163 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-31 | 99 | 158 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-13 | 99 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-12 | 100 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-21 | 100 | 158 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.9E-12 | 139 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MYCDSASDFD LSLLDSIRQY LLEDDCDTIP GQVVENLPKT ELHDDAINVD QWINFDQLFD 60 AAEETVAVNN ASFPSFEVNF QVETTAAVPK SHAPPKEVNY RGVRRRPWGT YAAEIRDPKR 120 NGARIWLGTY ETPEGAALAY DRAAFNMRGA KAKLNFPHLI GSNQVEPVRV RSNKRRSPEP 180 SSSCSSAQSP SST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-28 | 96 | 164 | 2 | 70 | ATERF1 |
3gcc_A | 3e-28 | 96 | 164 | 2 | 70 | ATERF1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX586436 | 5e-56 | JX586436.1 Gossypium hirsutum clone NBRI_GE20263 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017618979.1 | 1e-143 | PREDICTED: ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A1U8NYR8 | 1e-140 | A0A1U8NYR8_GOSHI; ethylene-responsive transcription factor 1-like | ||||
STRING | Gorai.004G070800.1 | 1e-126 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 2e-43 | ethylene-responsive element binding factor 13 |