PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26993_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 193aa    MW: 21509.8 Da    PI: 4.9037
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26993_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-19100150356
                         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                 y+GVr+++ +g ++AeIrdp+ ng  +r++lg++ t+e+Aa a+++a+ +++g+
  Cotton_A_26993_BGI-A2_v1.0 100 YRGVRRRP-WGTYAAEIRDPKRNG--ARIWLGTYETPEGAALAYDRAAFNMRGA 150
                                 9*******.**********98776..*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.20E-2999159No hitNo description
PROSITE profilePS5103223.20999157IPR001471AP2/ERF domain
SMARTSM003803.6E-3499163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-3199158IPR001471AP2/ERF domain
PfamPF008473.7E-1399149IPR001471AP2/ERF domain
PRINTSPR003671.9E-12100111IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-21100158IPR016177DNA-binding domain
PRINTSPR003671.9E-12139159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MYCDSASDFD LSLLDSIRQY LLEDDCDTIP GQVVENLPKT ELHDDAINVD QWINFDQLFD  60
AAEETVAVNN ASFPSFEVNF QVETTAAVPK SHAPPKEVNY RGVRRRPWGT YAAEIRDPKR  120
NGARIWLGTY ETPEGAALAY DRAAFNMRGA KAKLNFPHLI GSNQVEPVRV RSNKRRSPEP  180
SSSCSSAQSP SST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2896164270ATERF1
3gcc_A3e-2896164270ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5864365e-56JX586436.1 Gossypium hirsutum clone NBRI_GE20263 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618979.11e-143PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLA0A1U8NYR81e-140A0A1U8NYR8_GOSHI; ethylene-responsive transcription factor 1-like
STRINGGorai.004G070800.11e-126(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-43ethylene-responsive element binding factor 13