PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_26962_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 403aa MW: 45521.6 Da PI: 7.9251

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_26962_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.7	5.3e-08	307	361	1	46
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 r+ WT+eE++ l+++v+++ + W++I ++ +R + ++k++w + Cotton_A_26962_BGI-A2_v1.0 307 RLHWTAEEEDMLKELVHKFSSQvnkniPWRKILEHGRpvfhSTRIPVDLKDKWKN 361 789******************************99**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.706	302	367	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-10	303	370	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.58E-9	305	367	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-5	306	365	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-6	308	362	IPR001005	SANT/Myb domain
CDD	cd11660	4.19E-8	310	363	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MGKFYCPYCL YKKEVARFKD LTTEAMLARN ELSNFICLRR DSRNKEREGE TLSMKGASVS 60 TMATEVSCGD CRNGLNDDGK ETRHHSQDET RGVDVIRKEQ SNEQNISRAH GFENVRNGEM 120 MEEVEEDSSD SGGDDIGEGQ QQKRPSSSSG VRTVEETQGV ASIRKEKSDE QNLPMANGFE 180 NVGNRERMEE DIEISSDNGN AEIGDDRQQL RPSSSKVPVI ESFEFVSPNL DTETLVTHQK 240 RDKQRANKAQ PLKVVSSEKS SLQPSTSAKN MNVNQERKTV AVKISEEGAK STKRPLLPVL 300 GTEKRRRLHW TAEEEDMLKE LVHKFSSQVN KNIPWRKILE HGRPVFHSTR IPVDLKDKWK 360 NIVAKEISKG SKIKARDSST TSGSRNRFSV PSFYPFLSNS SDF

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MGKFYCPYCL YKKEVARFKD LTTEAMLARN ELSNFICLRR DSRNKEREGE TLSMKGASVS  60
TMATEVSCGD CRNGLNDDGK ETRHHSQDET RGVDVIRKEQ SNEQNISRAH GFENVRNGEM  120
MEEVEEDSSD SGGDDIGEGQ QQKRPSSSSG VRTVEETQGV ASIRKEKSDE QNLPMANGFE  180
NVGNRERMEE DIEISSDNGN AEIGDDRQQL RPSSSKVPVI ESFEFVSPNL DTETLVTHQK  240
RDKQRANKAQ PLKVVSSEKS SLQPSTSAKN MNVNQERKTV AVKISEEGAK STKRPLLPVL  300
GTEKRRRLHW TAEEEDMLKE LVHKFSSQVN KNIPWRKILE HGRPVFHSTR IPVDLKDKWK  360
NIVAKEISKG SKIKARDSST TSGSRNRFSV PSFYPFLSNS SDF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	303	307	KRRRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017602988.1	0.0	PREDICTED: uncharacterized protein LOC108450029 isoform X3
Refseq	XP_017602997.1	0.0	PREDICTED: uncharacterized protein LOC108450029 isoform X4
TrEMBL	A0A0B0MYQ6	0.0	A0A0B0MYQ6_GOSAR; snRNA-activating complex subunit 4
STRING	Gorai.001G100000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15395	5	7