PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_26935_BGI-A2_v1.0 | ||||||||
Common Name | F383_24009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 224aa MW: 24268.8 Da PI: 8.4291 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 94.9 | 8.7e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +C++C+vlr++C+++C+l+ ++ p++q ++ +v+k+FG++ ++++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg Cotton_A_26935_BGI-A2_v1.0 2 SCNGCRVLRKGCSDSCILRSCLqwidnPESQGFATLFVAKFFGRAGLMSFISAVPEPQRPALFQSLLFEACGRTVNPVNGAVG 84 6*************************99******************************************************* PP DUF260 79 vilklqqqleqlkaelall 97 ++++++++++q+++e++l+ Cotton_A_26935_BGI-A2_v1.0 85 LLWAGNWHVCQAAVETVLR 103 *************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.447 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.9E-25 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDSCILR SCLQWIDNPE SQGFATLFVA KFFGRAGLMS FISAVPEPQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWAGN WHVCQAAVET VLRGGTLRPI PELHAPTESN 120 EASEAAGTAD MWKLQETATS LNSNCRFSTS RSKVSSHKRR TIGELKKLQP SDLDLCLTPS 180 FKGNRVLDNR RPGTPSLISD ESVMTATCTE SGFAGQGKLL NLFV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017605570.1 | 1e-165 | PREDICTED: LOB domain-containing protein 39-like | ||||
Swissprot | Q9SZE8 | 5e-79 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A0B0NW33 | 1e-163 | A0A0B0NW33_GOSAR; LOB domain-containing 39-like protein | ||||
STRING | Gorai.007G056300.1 | 1e-151 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM821 | 28 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 2e-81 | LOB domain-containing protein 39 |