PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26934_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 454aa    MW: 50593.8 Da    PI: 6.3434
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26934_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS304.52.6e-93524512373
                        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl. 83 
                                 ++lL++cA+a++s+d++laq++++ l+++a pdgd++qRl++ f++AL  r a+  s+ +k l++ +++++n s e++ +++ 
  Cotton_A_26934_BGI-A2_v1.0  52 EQLLVHCANAIESNDATLAQQIIWVLNNIAPPDGDSNQRLTSAFLRALIVRAAK--SGSCKMLAAMANAHRNLSVETHTFSVi 132
                                 79****************************************************..666666666666666655555555444 PP

                        GRAS  84 ....fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeele 159
                                     f++++P+++f++ taN aIleaveg + +Hi+D++ ++++Q p+L++a+a+R egpp +++T+ g p+ +      ++e
  Cotton_A_26934_BGI-A2_v1.0 133 elanFVDLTPWHRFGFTTANAAILEAVEGYSVIHIVDLSSTYCMQIPTLIDAIANRFEGPPLVKLTVPGVPKDVpplLDLTYE 215
                                 5599******************************************************************99999888999** PP

                        GRAS 160 etgerLakfAeelgvpfefnvl.......vakrledleleeLrvkp.gEalaVnlvlqlhrll................desv 218
                                 e+g++L +fA++ +v +ef+++        a+ +++l++++L   + gEal++n++++lh+++                 +++
  Cotton_A_26934_BGI-A2_v1.0 216 ELGSKLVNFARSRNVMLEFRAVpsthadgFASLIDQLRIQHLVYAEaGEALVINCHMMLHYIPeetssplpntnsnpytFQPT 298
                                 **********************9985555555566667777766669******************************998999 PP

                        GRAS 219 sleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
                                 s +s r+ +Lk++++l+P++ ++v+++ad++s++++ r+ +a++y +  +d++++ lp  s++r+++E+  + ++++nv+a+e
  Cotton_A_26934_BGI-A2_v1.0 299 SNPSLRTMFLKALRGLNPTIAILVDEDADLTSNNLVCRLRSAFNYLWIPYDTVDTFLPIGSKQRQWYEAN-ICWKVENVIAHE 380
                                 999999****************************************************************.************ PP

                        GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                 g +r+er e++++W +r+++a F+ v++++++++++k++l +++  g+ +++e++ lvl+Wk++++v+++aW
  Cotton_A_26934_BGI-A2_v1.0 381 GLQRVERVESKSRWVQRMRNAEFRGVSFGDETVSEVKTMLDEHA-AGWGLKKEDDDLVLTWKGHNVVFATAW 451
                                 ********************************************.999************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.70125433IPR005202Transcription factor GRAS
PfamPF035148.9E-9152451IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MQFTGNPSHS LHQIAPFSIP TMNKNQIHQA RPWPGFPTSK GLASFGDANC MEQLLVHCAN  60
AIESNDATLA QQIIWVLNNI APPDGDSNQR LTSAFLRALI VRAAKSGSCK MLAAMANAHR  120
NLSVETHTFS VIELANFVDL TPWHRFGFTT ANAAILEAVE GYSVIHIVDL SSTYCMQIPT  180
LIDAIANRFE GPPLVKLTVP GVPKDVPPLL DLTYEELGSK LVNFARSRNV MLEFRAVPST  240
HADGFASLID QLRIQHLVYA EAGEALVINC HMMLHYIPEE TSSPLPNTNS NPYTFQPTSN  300
PSLRTMFLKA LRGLNPTIAI LVDEDADLTS NNLVCRLRSA FNYLWIPYDT VDTFLPIGSK  360
QRQWYEANIC WKVENVIAHE GLQRVERVES KSRWVQRMRN AEFRGVSFGD ETVSEVKTML  420
DEHAAGWGLK KEDDDLVLTW KGHNVVFATA WVPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-484645382474Protein SHORT-ROOT
5b3h_B6e-494645328420Protein SHORT-ROOT
5b3h_E6e-494645328420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605332.10.0PREDICTED: scarecrow-like protein 32 isoform X1
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A2P5Y0E00.0A0A2P5Y0E0_GOSBA; Uncharacterized protein
STRINGGorai.007G056200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54452750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein