PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26928_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 303aa    MW: 32992.2 Da    PI: 7.0334
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26928_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.11.2e-19550147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                +g+W++eEd+ll ++v+++G+++W++I++ ++ gR++k+c++rw + 
  Cotton_A_26928_BGI-A2_v1.0  5 KGPWSPEEDDLLQKLVQKYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 50
                                79******************************.***********985 PP
2Myb_DNA-binding57.43.4e-1859101347
                                 SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  Cotton_A_26928_BGI-A2_v1.0  59 AFTPEEDETIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 101
                                 79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.751155IPR017930Myb domain
SuperFamilySSF466891.47E-32298IPR009057Homeodomain-like
SMARTSM007177.2E-18453IPR001005SANT/Myb domain
PfamPF002491.4E-19550IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-26658IPR009057Homeodomain-like
CDDcd001674.47E-17749No hitNo description
SMARTSM007173.8E-1556104IPR001005SANT/Myb domain
PROSITE profilePS5129421.46757106IPR017930Myb domain
PfamPF002491.1E-1559101IPR001005SANT/Myb domain
CDDcd001671.37E-1259102No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2359105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDRIKGPWSP EEDDLLQKLV QKYGPRNWSL ISKSIPGRSG KSCRLRWCNQ LSPQVEHRAF  60
TPEEDETIIR AHARFGNKWA TIARLLNGRT DNAIKNHWNS TLKRKCLSVG EESNFIIHGG  120
YDGNLGGEGE QQPLKRSVSA GLYMSPGSPS GSDLSDSSVP VLSSSHVYKP IPRTGGVSVD  180
VNVMPLPGVE AAASSSNDPP TSLSLSLPGA ESYELSVSTL PVTESTQTRN EAKNDGKGGE  240
VMGFSAEFMA VMQEMIRMEV RDYMVQMQQQ NGGVSRGEGM GMCLDAGFRN VLSMSRVGVN  300
KID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-4241063105C-Myb DNA-Binding Domain
1msf_C3e-4241063105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591221e-70AJ459122.1 Gossypium hirsutum partial myb104b gene, clone pGhMYB104b.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017603005.10.0PREDICTED: transcription factor MYB44-like
SwissprotO231601e-108MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2P5VS200.0A0A2P5VS20_GOSBA; Uncharacterized protein
STRINGGorai.007G055600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.15e-92myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]