PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26719_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 261aa    MW: 29161.7 Da    PI: 6.608
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26719_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.23.2e-2179129256
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Cotton_A_26719_BGI-A2_v1.0  79 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 129
                                 59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.16E-3478138No hitNo description
PROSITE profilePS5103223.23579136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3279137IPR001471AP2/ERF domain
SMARTSM003802.3E-3879142IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2479137IPR016177DNA-binding domain
PRINTSPR003672.1E-118091IPR001471AP2/ERF domain
PfamPF008471.1E-1480129IPR001471AP2/ERF domain
PRINTSPR003672.1E-11102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MLGFEQTGSS LGLNELTPSQ ILQIQSQILH QQQQQQVASM AAVATPPTTT FENPRVGFLS  60
PKPVPMKHVS STPPKAAKLY RGVRQRHWGK WVAEIRLPKN RTRLWLGTFD TAEEAALAYD  120
KAAYKLRGEF ARLNFPHLKH QGAHVFGEFG DYKPLHASVD AKLQAICQSL QAQGNPVKTK  180
TLPKAAEFHY PIKTEEFDHK QDNSSSSSSS SVDESSLAGS LSSPESDITF FDFSDSKWED  240
NEIENFSLDK FPSLEIDWEA I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2178136160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5275460.0HQ527546.1 Gossypium herbaceum clone NBRI_C2_1470 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017615755.10.0PREDICTED: ethylene-responsive transcription factor ERF060
SwissprotO656655e-78ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A1U8NPP10.0A0A1U8NPP1_GOSHI; ethylene-responsive transcription factor ERF060-like
TrEMBLA0A2P5WFP70.0A0A2P5WFP7_GOSBA; Uncharacterized protein
STRINGGorai.003G038200.11e-149(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.18e-56ERF family protein