PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_26704_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 310aa MW: 33797.4 Da PI: 9.5212

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_26704_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.7	3.5e-40	34	94	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk++ Cotton_A_26704_BGI-A2_v1.0 34 QDQALKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKMK 94 6899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-27	29	92	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-33	35	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.432	38	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MMSLDNPPAK PGGGGSKEET QKGGSRKTSS TRTQDQALKC PRCDSPNTKF CYYNNYSLTQ 60 PRHFCKTCRR YWTKGGALRN VPIGGGCRKN KKMKSSSRPS SGDPKGSTSE MGGGLKFFHD 120 ISPAMDFQLG GLSFQSPATG IYNQFASFGD GNNNSSVGSP LMGFSNYPQP LPSVTTNLTG 180 AIQDMGSSLN VNSNLASSIE SLSSINQDLH WKLQQQRLAT MLFDGGEQNQ AQQQKPLPIL 240 FQNLEVSKPE NVSTMGNPRK SNETAKEWFF GNSYATPTTS SNGNDNNNTS NWNGVQVQPW 300 NDLNQYTTLP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017622511.1	0.0	PREDICTED: dof zinc finger protein DOF5.7-like
Swissprot	Q9LSL6	2e-64	DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBL	A0A2P5YUE4	0.0	A0A2P5YUE4_GOSBA; Uncharacterized protein
STRING	Gorai.003G036800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4950	28	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	8e-55	Dof family protein

Publications ? help Back to Top
Castorina G,Fox S,Tonelli C,Galbiati M,Conti L A novel role for STOMATAL CARPENTER 1 in stomata patterning. BMC Plant Biol., 2016. 16(1): p. 172 [PMID:27484174]