PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_26598_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TALE | ||||||||
Protein Properties | Length: 303aa MW: 34191.6 Da PI: 5.8259 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.9 | 8.1e-09 | 247 | 280 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp+++++ LA+ +gL+++q+ +WF N+R ++ Cotton_A_26598_BGI-A2_v1.0 247 WPYPTEADKVGLAEATGLDQKQINNWFINQRKRH 280 69*****************************885 PP | |||||||
2 | ELK | 28.9 | 2.5e-10 | 201 | 221 | 2 | 22 |
ELK 2 LKhqLlrKYsgyLgsLkqEFs 22 LK+ Ll KYsgy+++Lk+EFs Cotton_A_26598_BGI-A2_v1.0 201 LKDKLLEKYSGYISTLKHEFS 221 9*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.7E-18 | 76 | 120 | IPR005540 | KNOX1 |
Pfam | PF03790 | 8.8E-19 | 77 | 115 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.5E-22 | 125 | 176 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.5E-22 | 129 | 175 | IPR005541 | KNOX2 |
Pfam | PF03789 | 1.9E-9 | 200 | 221 | IPR005539 | ELK domain |
SMART | SM01188 | 2.2E-6 | 200 | 221 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.987 | 200 | 220 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.742 | 220 | 283 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-10 | 222 | 287 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.44E-18 | 222 | 296 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.33E-13 | 224 | 284 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.1E-27 | 225 | 284 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.8E-17 | 240 | 279 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 258 | 281 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MEEHYGYHSS VVYPMETTQP ENVLSYLPVV NYSTQPPAFE EHVFGLSGSS PGISDADSVI 60 AEIPRAGFED DRLSSTAIRA KIASHPLYPK LLQAHIDCHK VGTPPAIATI LDEMGGADER 120 GLDLVPCSVD ADPQLDHFME TYCEMLVKFK SDLSKPFDEA TTFLNSIQMQ LSHLCSGSSE 180 EDLSGGEMVP HDYHKNGDPQ LKDKLLEKYS GYISTLKHEF SKHKKKGKLP RDARQILLHW 240 WDLHYKWPYP TEADKVGLAE ATGLDQKQIN NWFINQRKRH WKPSGNMQIA IMDNLYGPFS 300 MNV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ650105 | 1e-168 | HQ650105.1 Gossypium hirsutum clone BAC 259M16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017636027.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 6 | ||||
Swissprot | Q84JS6 | 3e-98 | KNAT6_ARATH; Homeobox protein knotted-1-like 6 | ||||
TrEMBL | A0A1U8MMN4 | 0.0 | A0A1U8MMN4_GOSHI; homeobox protein knotted-1-like 6 | ||||
STRING | Gorai.008G296800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM835 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 7e-91 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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