PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26519_BGI-A2_v1.0
Common NameF383_20512
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 277aa    MW: 31899.4 Da    PI: 4.5695
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26519_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.5e-1857110356
                                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV +WFqNrRa++k
  Cotton_A_26519_BGI-A2_v1.0  57 KKRRLSMNQVKALEKNFELENKLEPERKVKLAEELGLQPRQVAIWFQNRRARWK 110
                                 566899***********************************************9 PP

2HD-ZIP_I/II127.17.6e-4156148193
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEkdy +Lk++y alk + ++Le+e
  Cotton_A_26519_BGI-A2_v1.0  56 EKKRRLSMNQVKALEKNFELENKLEPERKVKLAEELGLQPRQVAIWFQNRRARWKTKQLEKDYGVLKANYSALKLDYDNLEQE 138
                                 69********************************************************************************* PP

                 HD-ZIP_I/II  84 veeLreelke 93 
                                 +++L++el+e
  Cotton_A_26519_BGI-A2_v1.0 139 KQALTAELRE 148
                                 ******9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.76752112IPR001356Homeobox domain
SMARTSM003891.9E-1755116IPR001356Homeobox domain
SuperFamilySSF466891.45E-1855123IPR009057Homeodomain-like
CDDcd000866.27E-1557113No hitNo description
PfamPF000468.2E-1657110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-1959119IPR009057Homeodomain-like
PRINTSPR000317.6E-68392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000317.6E-692108IPR000047Helix-turn-helix motif
PfamPF021838.1E-17112153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MKQLTCSGSL DALNPIFPPK EEKNSKKKQI YSREFQAMLD GLEEEDSLEE ADQTTEKKRR  60
LSMNQVKALE KNFELENKLE PERKVKLAEE LGLQPRQVAI WFQNRRARWK TKQLEKDYGV  120
LKANYSALKL DYDNLEQEKQ ALTAELRELK AKLEENSESS HSVKEDSPKS SQQVKDQGFF  180
DNDDDSNEIV KEESNGNAQL LISPSSSSSF QFNGYSSSSD SSNHLWFQPF DSSLILGNMY  240
QPQLVKVEEQ CVFTTEESCN FFSVDQAPTL QWYFTGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628210.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A0B0MIF30.0A0A0B0MIF3_GOSAR; Homeobox-leucine zipper ATHB-6-like protein
STRINGGorai.009G233900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.13e-32homeobox protein 6