PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_26519_BGI-A2_v1.0 | ||||||||
Common Name | F383_20512 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 277aa MW: 31899.4 Da PI: 4.5695 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.5e-18 | 57 | 110 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa++k Cotton_A_26519_BGI-A2_v1.0 57 KKRRLSMNQVKALEKNFELENKLEPERKVKLAEELGLQPRQVAIWFQNRRARWK 110 566899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.1 | 7.6e-41 | 56 | 148 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEkdy +Lk++y alk + ++Le+e Cotton_A_26519_BGI-A2_v1.0 56 EKKRRLSMNQVKALEKNFELENKLEPERKVKLAEELGLQPRQVAIWFQNRRARWKTKQLEKDYGVLKANYSALKLDYDNLEQE 138 69********************************************************************************* PP HD-ZIP_I/II 84 veeLreelke 93 +++L++el+e Cotton_A_26519_BGI-A2_v1.0 139 KQALTAELRE 148 ******9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.767 | 52 | 112 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-17 | 55 | 116 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.45E-18 | 55 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.27E-15 | 57 | 113 | No hit | No description |
Pfam | PF00046 | 8.2E-16 | 57 | 110 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-19 | 59 | 119 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.6E-6 | 83 | 92 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 87 | 110 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.6E-6 | 92 | 108 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 8.1E-17 | 112 | 153 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MKQLTCSGSL DALNPIFPPK EEKNSKKKQI YSREFQAMLD GLEEEDSLEE ADQTTEKKRR 60 LSMNQVKALE KNFELENKLE PERKVKLAEE LGLQPRQVAI WFQNRRARWK TKQLEKDYGV 120 LKANYSALKL DYDNLEQEKQ ALTAELRELK AKLEENSESS HSVKEDSPKS SQQVKDQGFF 180 DNDDDSNEIV KEESNGNAQL LISPSSSSSF QFNGYSSSSD SSNHLWFQPF DSSLILGNMY 240 QPQLVKVEEQ CVFTTEESCN FFSVDQAPTL QWYFTGQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 112 | RRARWKTKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017628210.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
TrEMBL | A0A0B0MIF3 | 0.0 | A0A0B0MIF3_GOSAR; Homeobox-leucine zipper ATHB-6-like protein | ||||
STRING | Gorai.009G233900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM545 | 28 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 3e-32 | homeobox protein 6 |